Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 COX20P1-201ENST00000366529 357 ntBASIC16.25■□□□□ 0.19
HLA-DOAP06340 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 PIFO-201ENST00000369737 746 ntTSL 2 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 GEMIN8P4-201ENST00000380526 729 ntBASIC16.25■□□□□ 0.19
HLA-DOAP06340 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 AC068831.5-201ENST00000557387 328 ntBASIC16.25■□□□□ 0.19
HLA-DOAP06340 FAM187B2P-201ENST00000577135 713 ntBASIC16.25■□□□□ 0.19
HLA-DOAP06340 AC132812.1-201ENST00000583145 892 ntBASIC16.25■□□□□ 0.19
HLA-DOAP06340 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 AC005274.1-201ENST00000623460 802 ntBASIC16.25■□□□□ 0.19
HLA-DOAP06340 ESR1-214ENST00000638569 132 ntTSL 5 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HLA-DOAP06340 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HLA-DOAP06340 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 FAM45BP-202ENST00000592932 1624 ntBASIC16.24■□□□□ 0.19
HLA-DOAP06340 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 HNRNPA1P2-207ENST00000432375 960 ntBASIC16.24■□□□□ 0.19
HLA-DOAP06340 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 AC005077.3-201ENST00000449614 213 ntBASIC16.24■□□□□ 0.19
HLA-DOAP06340 RN7SL288P-201ENST00000490496 291 ntBASIC16.24■□□□□ 0.19
HLA-DOAP06340 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 AC026336.4-201ENST00000624565 1050 ntBASIC16.24■□□□□ 0.19
HLA-DOAP06340 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 KRT8P42-201ENST00000405771 1399 ntBASIC16.24■□□□□ 0.19
HLA-DOAP06340 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HLA-DOAP06340 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
HLA-DOAP06340 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 AC245140.2-201ENST00000624054 1939 ntBASIC16.23■□□□□ 0.19
HLA-DOAP06340 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HLA-DOAP06340 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DOAP06340 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms