Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC11.72□□□□□ -0.53
CD74P04233 KIF9-207ENST00000444589 2791 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CD74P04233 AC022497.1-201ENST00000624916 3691 ntBASIC11.72□□□□□ -0.53
CD74P04233 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CD74P04233 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC11.72□□□□□ -0.53
CD74P04233 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC11.72□□□□□ -0.53
CD74P04233 AC244394.1-201ENST00000435000 1665 ntBASIC11.71□□□□□ -0.53
CD74P04233 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 REXO5-208ENST00000564274 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 MMD2-203ENST00000406755 2372 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 ABLIM3-203ENST00000356541 2290 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 ABLIM3-211ENST00000517451 2287 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 NOP2-212ENST00000541778 3038 ntTSL 2 BASIC11.71□□□□□ -0.53
CD74P04233 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 INTS13-201ENST00000261191 2974 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 AF013593.1-201ENST00000458074 1487 ntBASIC11.71□□□□□ -0.53
CD74P04233 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 LINC01024-201ENST00000499203 2769 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 TLE3-220ENST00000559929 3408 ntTSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 DQX1-202ENST00000404568 2689 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
CD74P04233 PHB-215ENST00000617874 1908 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 AC245140.2-201ENST00000624054 1939 ntBASIC11.71□□□□□ -0.53
CD74P04233 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 KRT17P7-201ENST00000451704 1104 ntBASIC11.71□□□□□ -0.53
CD74P04233 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC11.71□□□□□ -0.53
CD74P04233 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC11.71□□□□□ -0.53
CD74P04233 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
CD74P04233 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC11.71□□□□□ -0.53
CD74P04233 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC11.71□□□□□ -0.53
CD74P04233 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC11.71□□□□□ -0.53
CD74P04233 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC11.71□□□□□ -0.53
CD74P04233 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
CD74P04233 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC11.71□□□□□ -0.53
CD74P04233 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC11.71□□□□□ -0.53
CD74P04233 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC11.71□□□□□ -0.53
CD74P04233 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC11.71□□□□□ -0.53
CD74P04233 AC006453.4-201ENST00000636949 1252 ntBASIC11.71□□□□□ -0.53
CD74P04233 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CD74P04233 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
CD74P04233 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
CD74P04233 CTAGE13P-201ENST00000416709 2446 ntBASIC11.71□□□□□ -0.54
CD74P04233 PPP1R26P2-201ENST00000611403 3595 ntBASIC11.71□□□□□ -0.54
CD74P04233 ARHGEF9-203ENST00000374872 2364 ntTSL 2 BASIC11.71□□□□□ -0.54
CD74P04233 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC11.71□□□□□ -0.54
CD74P04233 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
CD74P04233 AC020763.3-201ENST00000625095 2904 ntBASIC11.71□□□□□ -0.54
CD74P04233 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CD74P04233 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
CD74P04233 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CD74P04233 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CD74P04233 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.54
CD74P04233 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
CD74P04233 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
CD74P04233 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC11.71□□□□□ -0.54
CD74P04233 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC11.71□□□□□ -0.54
CD74P04233 DUSP14-205ENST00000614411 2207 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.54
CD74P04233 TMEM30A-203ENST00000475111 2791 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
CD74P04233 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CD74P04233 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CD74P04233 PDZRN3-205ENST00000466780 2737 ntTSL 2 BASIC11.71□□□□□ -0.54
CD74P04233 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
CD74P04233 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.54
CD74P04233 KIAA1958-202ENST00000374244 2643 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.54
CD74P04233 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CD74P04233 KCTD21-AS1-207ENST00000600795 1549 ntBASIC11.7□□□□□ -0.54
CD74P04233 ZBTB26-201ENST00000373654 2047 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
CD74P04233 ARHGEF3-213ENST00000496106 1994 ntTSL 2 BASIC11.7□□□□□ -0.54
CD74P04233 FLJ30679-201ENST00000624773 1980 ntBASIC11.7□□□□□ -0.54
CD74P04233 KRT8P4-201ENST00000509735 1454 ntBASIC11.7□□□□□ -0.54
CD74P04233 AC007541.1-201ENST00000570282 1469 ntBASIC11.7□□□□□ -0.54
CD74P04233 ZNF568-201ENST00000333987 2441 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CD74P04233 AC026992.2-203ENST00000563004 2419 ntBASIC11.7□□□□□ -0.54
CD74P04233 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
CD74P04233 AMT-239ENST00000636865 1914 ntTSL 5 BASIC11.7□□□□□ -0.54
CD74P04233 LOXL3-204ENST00000409549 2897 ntTSL 2 BASIC11.7□□□□□ -0.54
CD74P04233 TTC4-201ENST00000371281 2395 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CD74P04233 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
CD74P04233 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC11.7□□□□□ -0.54
CD74P04233 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
CD74P04233 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
CD74P04233 AC008132.1-202ENST00000342005 1389 ntBASIC11.7□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms