Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 HLA-DMA-203ENST00000395305 777 ntBASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 ERP29P1-201ENST00000442902 706 ntBASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 NOC2LP1-201ENST00000450578 752 ntBASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 MRPL22P1-201ENST00000505398 616 ntBASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AC095040.1-201ENST00000513286 675 ntBASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 FOS-204ENST00000554617 796 ntTSL 2 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AC132825.4-202ENST00000578792 434 ntBASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AC009145.4-201ENST00000625119 1294 ntBASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 SOD2-202ENST00000367054 815 ntTSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AC092506.1-202ENST00000401022 528 ntBASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AL031713.1-201ENST00000564813 661 ntBASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 KRT18P8-201ENST00000581937 1246 ntBASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AC087392.5-201ENST00000612517 489 ntBASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms