Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC13.17□□□□□ -0.3
RAE1P78406 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC13.17□□□□□ -0.3
RAE1P78406 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 AC060814.4-201ENST00000594169 2163 ntBASIC13.17□□□□□ -0.3
RAE1P78406 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC13.17□□□□□ -0.3
RAE1P78406 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC13.17□□□□□ -0.3
RAE1P78406 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC13.17□□□□□ -0.3
RAE1P78406 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 POM121L14P-201ENST00000406100 1558 ntBASIC13.17□□□□□ -0.3
RAE1P78406 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
RAE1P78406 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
RAE1P78406 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RAE1P78406 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
RAE1P78406 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.17□□□□□ -0.3
RAE1P78406 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC13.17□□□□□ -0.3
RAE1P78406 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC13.17□□□□□ -0.3
RAE1P78406 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC13.17□□□□□ -0.3
RAE1P78406 AC106827.1-201ENST00000366454 431 ntBASIC13.17□□□□□ -0.3
RAE1P78406 OR2K2-202ENST00000374428 1038 ntBASIC13.17□□□□□ -0.3
RAE1P78406 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC13.17□□□□□ -0.3
RAE1P78406 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC13.17□□□□□ -0.3
RAE1P78406 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC13.17□□□□□ -0.3
RAE1P78406 REEP1-202ENST00000453231 940 ntTSL 2 BASIC13.17□□□□□ -0.3
RAE1P78406 AC012618.1-201ENST00000461223 412 ntBASIC13.17□□□□□ -0.3
RAE1P78406 RN7SL11P-201ENST00000471305 293 ntBASIC13.17□□□□□ -0.3
RAE1P78406 ARTN-209ENST00000479128 471 ntTSL 3 BASIC13.17□□□□□ -0.3
RAE1P78406 PACS1-203ENST00000524815 628 ntTSL 4 BASIC13.17□□□□□ -0.3
RAE1P78406 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
RAE1P78406 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 STUB1-204ENST00000564370 875 ntTSL 2 BASIC13.17□□□□□ -0.3
RAE1P78406 RN7SL665P-201ENST00000578793 300 ntBASIC13.17□□□□□ -0.3
RAE1P78406 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC13.17□□□□□ -0.3
RAE1P78406 AL049840.2-201ENST00000602722 535 ntBASIC13.17□□□□□ -0.3
RAE1P78406 HPX-213ENST00000615166 826 ntTSL 5 BASIC13.17□□□□□ -0.3
RAE1P78406 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC13.17□□□□□ -0.3
RAE1P78406 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 PI4KAP2-201ENST00000360806 2080 ntBASIC13.17□□□□□ -0.3
RAE1P78406 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC13.17□□□□□ -0.3
RAE1P78406 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 AL031719.1-201ENST00000623365 2587 ntBASIC13.17□□□□□ -0.3
RAE1P78406 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RAE1P78406 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RAE1P78406 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC13.17□□□□□ -0.3
RAE1P78406 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC13.16□□□□□ -0.3
RAE1P78406 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
RAE1P78406 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
RAE1P78406 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
RAE1P78406 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
RAE1P78406 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
RAE1P78406 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
RAE1P78406 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
RAE1P78406 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC13.16□□□□□ -0.3
RAE1P78406 CICP9-201ENST00000444451 1913 ntBASIC13.16□□□□□ -0.3
RAE1P78406 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC13.16□□□□□ -0.3
RAE1P78406 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
RAE1P78406 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC13.16□□□□□ -0.3
RAE1P78406 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
RAE1P78406 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC13.16□□□□□ -0.3
RAE1P78406 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.16□□□□□ -0.3
RAE1P78406 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RAE1P78406 DUTP3-201ENST00000450025 415 ntBASIC13.16□□□□□ -0.3
RAE1P78406 AL353637.1-201ENST00000451571 732 ntBASIC13.16□□□□□ -0.3
RAE1P78406 OAZ3-203ENST00000453029 729 ntTSL 5 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms