Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 SARS-202ENST00000369923 1882 ntTSL 5 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 AL928654.5-201ENST00000624831 2501 ntBASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 AP000356.3-201ENST00000382243 753 ntBASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 AL512430.1-201ENST00000392575 860 ntBASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 AL512306.1-201ENST00000432698 848 ntBASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 SCARNA12-201ENST00000459155 270 ntBASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 ORAOV1P1-201ENST00000503108 395 ntBASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 KLF17P1-201ENST00000547105 1126 ntBASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 FOS-206ENST00000555347 1280 ntTSL 2 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 AC138894.2-201ENST00000602838 371 ntBASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 CR392039.2-201ENST00000623182 509 ntBASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
TRIM39Q9HCM9 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 AC091046.1-201ENST00000331871 207 ntBASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 FGFR3P1-201ENST00000449999 601 ntBASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 RN7SL788P-201ENST00000460504 316 ntBASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 AP001184.1-201ENST00000637936 376 ntBASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 AC074138.1-201ENST00000611182 1303 ntBASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 TBC1D27-202ENST00000424239 1573 ntBASIC13.88□□□□□ -0.19
TRIM39Q9HCM9 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC13.87□□□□□ -0.19
TRIM39Q9HCM9 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms