Protein–RNA interactions for Protein: Q8IWZ4

TRIM48, Tripartite motif-containing protein 48, humanhuman

Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48Q8IWZ4 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 SOD2-202ENST00000367054 815 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 Z69890.1-201ENST00000382990 339 ntBASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 AL512306.1-201ENST00000432698 848 ntBASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 AC078991.1-201ENST00000437297 610 ntBASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 ERP29P1-201ENST00000442902 706 ntBASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 SLC25A15P3-201ENST00000505530 290 ntBASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 FOS-204ENST00000554617 796 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 AC145285.5-201ENST00000562217 361 ntBASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 AC242376.2-201ENST00000619355 883 ntBASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 HSPA7-201ENST00000445535 1927 ntBASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
TRIM48Q8IWZ4 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
TRIM48Q8IWZ4 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
TRIM48Q8IWZ4 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
TRIM48Q8IWZ4 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC13.77□□□□□ -0.2
TRIM48Q8IWZ4 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
TRIM48Q8IWZ4 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC13.77□□□□□ -0.2
TRIM48Q8IWZ4 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
TRIM48Q8IWZ4 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
TRIM48Q8IWZ4 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
TRIM48Q8IWZ4 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 ABR-202ENST00000302538 5289 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 AC098935.1-201ENST00000446057 611 ntBASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 RPS2P36-201ENST00000456516 831 ntBASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 NDUFS6P1-201ENST00000485187 316 ntBASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 ORAOV1P1-201ENST00000503108 395 ntBASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 AC089987.1-201ENST00000551654 2209 ntBASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 MT3-203ENST00000565838 421 ntTSL 3 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 MIR4706-201ENST00000582134 82 ntBASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 AC006372.4-201ENST00000624122 1543 ntBASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 RETN-203ENST00000629642 400 ntTSL 5 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 AL139158.3-201ENST00000641212 1562 ntBASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 MEX3B-202ENST00000558133 4333 ntBASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM48Q8IWZ4 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms