Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.8□□□□□ -0.04
LIG3P49916 TVP23A-201ENST00000299866 3360 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LIG3P49916 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 AL157996.1-201ENST00000624684 2299 ntBASIC14.8□□□□□ -0.04
LIG3P49916 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 PTPRN-202ENST00000409251 3622 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
LIG3P49916 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 GPAA1P2-201ENST00000417923 928 ntBASIC14.8□□□□□ -0.04
LIG3P49916 PUDPP3-201ENST00000445368 636 ntBASIC14.8□□□□□ -0.04
LIG3P49916 KRT8P13-201ENST00000463294 1010 ntBASIC14.8□□□□□ -0.04
LIG3P49916 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 AC126915.1-201ENST00000522847 1038 ntBASIC14.8□□□□□ -0.04
LIG3P49916 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.8□□□□□ -0.04
LIG3P49916 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.8□□□□□ -0.04
LIG3P49916 AC100827.2-201ENST00000563214 1194 ntBASIC14.8□□□□□ -0.04
LIG3P49916 AL162426.1-201ENST00000624141 743 ntBASIC14.8□□□□□ -0.04
LIG3P49916 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
LIG3P49916 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 DGKZ-216ENST00000528615 2692 ntTSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 AL136172.1-201ENST00000598590 1394 ntBASIC14.8□□□□□ -0.04
LIG3P49916 GOLGA6L4-202ENST00000422563 4155 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LIG3P49916 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC14.8□□□□□ -0.04
LIG3P49916 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.8□□□□□ -0.04
LIG3P49916 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIG3P49916 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.8□□□□□ -0.04
LIG3P49916 HERC3-203ENST00000407637 2634 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 HOTTIP-203ENST00000521028 3345 ntTSL 5 BASIC14.79□□□□□ -0.04
LIG3P49916 HERC6-202ENST00000273960 3473 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC14.79□□□□□ -0.04
LIG3P49916 ACO2-201ENST00000216254 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LIG3P49916 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.79□□□□□ -0.04
LIG3P49916 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.79□□□□□ -0.04
LIG3P49916 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LIG3P49916 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 KRT8P29-201ENST00000420409 1371 ntBASIC14.79□□□□□ -0.04
LIG3P49916 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC14.79□□□□□ -0.04
LIG3P49916 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC14.79□□□□□ -0.04
LIG3P49916 AC022494.1-201ENST00000466044 728 ntBASIC14.79□□□□□ -0.04
LIG3P49916 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
LIG3P49916 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC14.79□□□□□ -0.04
LIG3P49916 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
LIG3P49916 LPO-204ENST00000543544 2350 ntTSL 2 BASIC14.79□□□□□ -0.04
LIG3P49916 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
LIG3P49916 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.79□□□□□ -0.04
LIG3P49916 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.79□□□□□ -0.04
LIG3P49916 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC14.79□□□□□ -0.04
LIG3P49916 MIR3615-201ENST00000581999 87 ntBASIC14.79□□□□□ -0.04
LIG3P49916 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 NKG7-204ENST00000595217 816 ntTSL 2 BASIC14.79□□□□□ -0.04
LIG3P49916 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC14.79□□□□□ -0.04
LIG3P49916 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.79□□□□□ -0.04
LIG3P49916 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC14.79□□□□□ -0.04
LIG3P49916 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 L3MBTL1-203ENST00000373135 3218 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIG3P49916 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC14.78□□□□□ -0.04
LIG3P49916 PRR3-202ENST00000376560 2254 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIG3P49916 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
LIG3P49916 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms