Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL9A1P20849 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC14.27□□□□□ -0.12
COL9A1P20849 AL035563.1-201ENST00000609087 1539 ntBASIC14.27□□□□□ -0.12
COL9A1P20849 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.27□□□□□ -0.12
COL9A1P20849 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.27□□□□□ -0.12
COL9A1P20849 NDRG1-222ENST00000522476 1385 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL9A1P20849 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL9A1P20849 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
COL9A1P20849 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
COL9A1P20849 IMMP1L-201ENST00000278200 795 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
COL9A1P20849 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL9A1P20849 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL9A1P20849 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL9A1P20849 IFNA14-201ENST00000380222 990 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
COL9A1P20849 AC245128.1-201ENST00000400864 1294 ntTSL 5 BASIC14.27□□□□□ -0.13
COL9A1P20849 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL9A1P20849 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL9A1P20849 TUBB8P9-201ENST00000422534 1276 ntBASIC14.27□□□□□ -0.13
COL9A1P20849 AL391863.1-201ENST00000422776 743 ntTSL 3 BASIC14.27□□□□□ -0.13
COL9A1P20849 TUBB8P10-201ENST00000430210 1279 ntBASIC14.27□□□□□ -0.13
COL9A1P20849 AL162253.1-201ENST00000443792 758 ntTSL 3 BASIC14.27□□□□□ -0.13
COL9A1P20849 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC14.27□□□□□ -0.13
COL9A1P20849 AL136084.1-201ENST00000449172 318 ntBASIC14.27□□□□□ -0.13
COL9A1P20849 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL9A1P20849 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
COL9A1P20849 NKAPP1-203ENST00000554109 573 ntTSL 4 BASIC14.27□□□□□ -0.13
COL9A1P20849 RN7SL455P-201ENST00000580629 282 ntBASIC14.27□□□□□ -0.13
COL9A1P20849 AC005332.2-201ENST00000590010 930 ntBASIC14.27□□□□□ -0.13
COL9A1P20849 AC097065.2-201ENST00000608159 533 ntBASIC14.27□□□□□ -0.13
COL9A1P20849 AC020978.9-201ENST00000624380 1141 ntBASIC14.27□□□□□ -0.13
COL9A1P20849 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC14.27□□□□□ -0.13
COL9A1P20849 AC138627.1-201ENST00000641127 1257 ntBASIC14.27□□□□□ -0.13
COL9A1P20849 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL9A1P20849 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL9A1P20849 AC104640.1-201ENST00000562617 2109 ntBASIC14.27□□□□□ -0.13
COL9A1P20849 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
COL9A1P20849 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL9A1P20849 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
COL9A1P20849 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL9A1P20849 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL9A1P20849 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL9A1P20849 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
COL9A1P20849 AP002414.2-201ENST00000591780 3365 ntBASIC14.26□□□□□ -0.13
COL9A1P20849 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.26□□□□□ -0.13
COL9A1P20849 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
COL9A1P20849 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
COL9A1P20849 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC14.26□□□□□ -0.13
COL9A1P20849 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC14.26□□□□□ -0.13
COL9A1P20849 NR1I2-207ENST00000640105 1305 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.26□□□□□ -0.13
COL9A1P20849 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
COL9A1P20849 MIR4435-2HG-201ENST00000308604 552 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 SGCA-202ENST00000344627 1057 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 OR52M2P-201ENST00000414298 959 ntBASIC14.26□□□□□ -0.13
COL9A1P20849 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC14.26□□□□□ -0.13
COL9A1P20849 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC14.26□□□□□ -0.13
COL9A1P20849 RPSAP12-201ENST00000435879 888 ntBASIC14.26□□□□□ -0.13
COL9A1P20849 AC012066.1-201ENST00000439252 694 ntBASIC14.26□□□□□ -0.13
COL9A1P20849 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC14.26□□□□□ -0.13
COL9A1P20849 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.26□□□□□ -0.13
COL9A1P20849 RN7SL684P-201ENST00000465665 294 ntBASIC14.26□□□□□ -0.13
COL9A1P20849 TRAIP-202ENST00000469027 1145 ntTSL 5 BASIC14.26□□□□□ -0.13
COL9A1P20849 TYW3-205ENST00000479111 1130 ntTSL 3 BASIC14.26□□□□□ -0.13
COL9A1P20849 BLNK-209ENST00000495266 440 ntTSL 5 BASIC14.26□□□□□ -0.13
COL9A1P20849 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC14.26□□□□□ -0.13
COL9A1P20849 RN7SKP155-201ENST00000516031 288 ntBASIC14.26□□□□□ -0.13
COL9A1P20849 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC14.26□□□□□ -0.13
COL9A1P20849 HERC2P5-202ENST00000564458 1164 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 HERC2P8-203ENST00000564795 1164 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 AC010319.4-201ENST00000593957 691 ntTSL 3 BASIC14.26□□□□□ -0.13
COL9A1P20849 AL133551.1-201ENST00000610279 1222 ntBASIC14.26□□□□□ -0.13
COL9A1P20849 MIR6741-201ENST00000618782 63 ntBASIC14.26□□□□□ -0.13
COL9A1P20849 AC019109.1-201ENST00000401725 1874 ntBASIC14.26□□□□□ -0.13
COL9A1P20849 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
COL9A1P20849 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.26□□□□□ -0.13
COL9A1P20849 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL9A1P20849 CDY3P-201ENST00000454543 1618 ntBASIC14.26□□□□□ -0.13
COL9A1P20849 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
COL9A1P20849 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL9A1P20849 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL9A1P20849 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
COL9A1P20849 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL9A1P20849 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.25□□□□□ -0.13
COL9A1P20849 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL9A1P20849 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL9A1P20849 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms