Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.25□□□□□ -0.13
HMGA1P17096 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HMGA1P17096 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HMGA1P17096 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
HMGA1P17096 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 ZNF436-AS1-201ENST00000335648 2547 ntBASIC14.24□□□□□ -0.13
HMGA1P17096 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HMGA1P17096 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
HMGA1P17096 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.24□□□□□ -0.13
HMGA1P17096 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HMGA1P17096 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 AC063926.3-201ENST00000624734 5658 ntBASIC14.24□□□□□ -0.13
HMGA1P17096 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HMGA1P17096 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HMGA1P17096 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 SIRPB3P-201ENST00000340424 1216 ntBASIC14.24□□□□□ -0.13
HMGA1P17096 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGA1P17096 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGA1P17096 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGA1P17096 NRADDP-201ENST00000437305 691 ntBASIC14.24□□□□□ -0.13
HMGA1P17096 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC14.24□□□□□ -0.13
HMGA1P17096 AC083801.1-201ENST00000491689 358 ntBASIC14.24□□□□□ -0.13
HMGA1P17096 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC14.24□□□□□ -0.13
HMGA1P17096 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC14.24□□□□□ -0.13
HMGA1P17096 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC14.24□□□□□ -0.13
HMGA1P17096 ABHD17AP9-201ENST00000561925 548 ntBASIC14.24□□□□□ -0.13
HMGA1P17096 JPT2-214ENST00000569765 782 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGA1P17096 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC14.24□□□□□ -0.13
HMGA1P17096 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
HMGA1P17096 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 AL161772.1-201ENST00000610494 4412 ntBASIC14.24□□□□□ -0.13
HMGA1P17096 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGA1P17096 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HMGA1P17096 STK3-218ENST00000617590 2485 ntTSL 5 BASIC14.24□□□□□ -0.13
HMGA1P17096 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGA1P17096 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HMGA1P17096 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGA1P17096 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGA1P17096 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.23□□□□□ -0.13
HMGA1P17096 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.23□□□□□ -0.13
HMGA1P17096 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.23□□□□□ -0.13
HMGA1P17096 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC14.23□□□□□ -0.13
HMGA1P17096 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC14.23□□□□□ -0.13
HMGA1P17096 OR7E155P-201ENST00000412208 1014 ntBASIC14.23□□□□□ -0.13
HMGA1P17096 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC14.23□□□□□ -0.13
HMGA1P17096 AL929302.1-201ENST00000426556 871 ntBASIC14.23□□□□□ -0.13
HMGA1P17096 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 AC025594.1-201ENST00000469533 543 ntBASIC14.23□□□□□ -0.13
HMGA1P17096 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
HMGA1P17096 CASP3-205ENST00000517513 964 ntTSL 5 BASIC14.23□□□□□ -0.13
HMGA1P17096 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HMGA1P17096 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC14.23□□□□□ -0.13
HMGA1P17096 RN7SL134P-201ENST00000579756 303 ntBASIC14.23□□□□□ -0.13
HMGA1P17096 MBP-238ENST00000580402 915 ntTSL 5 BASIC14.23□□□□□ -0.13
HMGA1P17096 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC14.23□□□□□ -0.13
HMGA1P17096 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 MANEA-AS1-201ENST00000564541 2268 ntBASIC14.23□□□□□ -0.13
HMGA1P17096 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HMGA1P17096 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
HMGA1P17096 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC14.23□□□□□ -0.13
HMGA1P17096 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms