Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 OR2A5-201ENST00000408906 1013 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
VCANP13611 RPL21P135-201ENST00000442539 791 ntBASIC13.86□□□□□ -0.19
VCANP13611 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC13.86□□□□□ -0.19
VCANP13611 LINC01194-203ENST00000513051 670 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 AC021678.2-201ENST00000521731 887 ntTSL 2 BASIC13.86□□□□□ -0.19
VCANP13611 AL354993.2-201ENST00000558738 542 ntTSL 4 BASIC13.86□□□□□ -0.19
VCANP13611 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC13.86□□□□□ -0.19
VCANP13611 Metazoa_SRP.163-201ENST00000611926 277 ntBASIC13.86□□□□□ -0.19
VCANP13611 PACRG-AS3-204ENST00000620150 567 ntTSL 4 BASIC13.86□□□□□ -0.19
VCANP13611 HIST1H2APS4-202ENST00000635537 681 ntBASIC13.86□□□□□ -0.19
VCANP13611 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.86□□□□□ -0.19
VCANP13611 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 AC006486.2-201ENST00000624246 2199 ntBASIC13.86□□□□□ -0.19
VCANP13611 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
VCANP13611 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.86□□□□□ -0.19
VCANP13611 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.86□□□□□ -0.19
VCANP13611 AL606760.3-201ENST00000569869 3591 ntBASIC13.86□□□□□ -0.19
VCANP13611 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 CDKN2AIPNLP2-201ENST00000274516 352 ntBASIC13.86□□□□□ -0.19
VCANP13611 CST11-202ENST00000377009 554 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 AC007255.1-202ENST00000447171 889 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 AP000926.2-201ENST00000469983 358 ntBASIC13.86□□□□□ -0.19
VCANP13611 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC13.86□□□□□ -0.19
VCANP13611 AL353997.3-201ENST00000586597 589 ntBASIC13.86□□□□□ -0.19
VCANP13611 SRGAP3-AS2-203ENST00000600323 1294 ntTSL 5 BASIC13.86□□□□□ -0.19
VCANP13611 AL078590.3-201ENST00000607531 750 ntTSL 3 BASIC13.86□□□□□ -0.19
VCANP13611 AC099795.2-201ENST00000639582 440 ntBASIC13.86□□□□□ -0.19
VCANP13611 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
VCANP13611 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.86□□□□□ -0.19
VCANP13611 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 ATF4P4-201ENST00000393544 1930 ntBASIC13.86□□□□□ -0.19
VCANP13611 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.86□□□□□ -0.19
VCANP13611 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC13.86□□□□□ -0.19
VCANP13611 TRIP12-205ENST00000409677 1507 ntTSL 2 BASIC13.86□□□□□ -0.19
VCANP13611 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
VCANP13611 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.86□□□□□ -0.19
VCANP13611 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 S100A6-202ENST00000368720 673 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
VCANP13611 POLR1C-202ENST00000372344 1119 ntTSL 5 BASIC13.86□□□□□ -0.19
VCANP13611 TPT1-203ENST00000379056 1101 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 ZNF343-203ENST00000381253 819 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 U3.49-201ENST00000391065 214 ntBASIC13.86□□□□□ -0.19
VCANP13611 MIR1307-201ENST00000408840 149 ntBASIC13.86□□□□□ -0.19
VCANP13611 MTND6P11-201ENST00000431890 483 ntBASIC13.86□□□□□ -0.19
VCANP13611 AC004870.4-202ENST00000433337 455 ntTSL 3 BASIC13.86□□□□□ -0.19
VCANP13611 RN7SL559P-201ENST00000476501 297 ntBASIC13.86□□□□□ -0.19
VCANP13611 CLDND1-223ENST00000511081 642 ntTSL 2 BASIC13.86□□□□□ -0.19
VCANP13611 LINC00662-204ENST00000588027 562 ntTSL 5 BASIC13.86□□□□□ -0.19
VCANP13611 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VCANP13611 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC13.86□□□□□ -0.19
VCANP13611 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 FOLR1-201ENST00000312293 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 AL357833.2-202ENST00000413757 372 ntTSL 3 BASIC13.85□□□□□ -0.19
VCANP13611 AC010395.2-201ENST00000509899 904 ntBASIC13.85□□□□□ -0.19
VCANP13611 SNORD55-201ENST00000581525 80 ntBASIC13.85□□□□□ -0.19
VCANP13611 MRPL34-206ENST00000602206 603 ntTSL 3 BASIC13.85□□□□□ -0.19
VCANP13611 AC004832.1-204ENST00000610737 1018 ntTSL 5 BASIC13.85□□□□□ -0.19
VCANP13611 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 SH3GLB2-206ENST00000417224 1468 ntTSL 5 BASIC13.85□□□□□ -0.19
VCANP13611 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.85□□□□□ -0.19
VCANP13611 TSN-212ENST00000536142 3328 ntTSL 2 BASIC13.85□□□□□ -0.19
VCANP13611 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.85□□□□□ -0.19
VCANP13611 KATNAL1-202ENST00000380617 1634 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
VCANP13611 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC13.85□□□□□ -0.19
VCANP13611 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.85□□□□□ -0.19
VCANP13611 DNPEP-205ENST00000373972 1578 ntTSL 2 BASIC13.85□□□□□ -0.19
VCANP13611 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC13.85□□□□□ -0.19
VCANP13611 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 PSORS1C2-201ENST00000259845 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 RNASE8-201ENST00000308227 634 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
VCANP13611 AC244197.2-201ENST00000370438 655 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 TCTE1-201ENST00000371504 616 ntTSL 3 BASIC13.85□□□□□ -0.19
VCANP13611 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 AC020728.1-201ENST00000605749 1216 ntBASIC13.85□□□□□ -0.19
VCANP13611 AC092687.3-201ENST00000606907 393 ntTSL 5 BASIC13.85□□□□□ -0.19
VCANP13611 ETV7-208ENST00000627426 1285 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 AL157832.2-205ENST00000597245 1649 ntBASIC13.85□□□□□ -0.19
VCANP13611 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 SIRPG-205ENST00000381583 1383 ntTSL 5 BASIC13.85□□□□□ -0.19
VCANP13611 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 TUBB4AP1-201ENST00000450755 1325 ntBASIC13.85□□□□□ -0.19
VCANP13611 TGM3-201ENST00000381458 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
VCANP13611 SPACA7-201ENST00000283550 795 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 SUCLG2P2-201ENST00000307241 1296 ntBASIC13.85□□□□□ -0.19
VCANP13611 KRBOX4-203ENST00000377919 993 ntAPPRIS ALT2 TSL 3 BASIC13.85□□□□□ -0.19
VCANP13611 AL356414.1-201ENST00000379526 686 ntTSL 3 BASIC13.85□□□□□ -0.19
VCANP13611 AP003717.2-201ENST00000534962 898 ntBASIC13.85□□□□□ -0.19
VCANP13611 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC13.85□□□□□ -0.19
VCANP13611 AC131274.3-201ENST00000578745 1271 ntBASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms