Protein–RNA interactions for Protein: Q9UND3

NPIPA1, Nuclear pore complex-interacting protein family member A1, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA1Q9UND3 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPIPA1Q9UND3 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPIPA1Q9UND3 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPIPA1Q9UND3 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
NPIPA1Q9UND3 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPIPA1Q9UND3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
NPIPA1Q9UND3 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPIPA1Q9UND3 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
NPIPA1Q9UND3 AL161729.1-201ENST00000604104 1402 ntBASIC20.59■□□□□ 0.89
NPIPA1Q9UND3 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPIPA1Q9UND3 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPIPA1Q9UND3 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.58■□□□□ 0.89
NPIPA1Q9UND3 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPIPA1Q9UND3 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPIPA1Q9UND3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPIPA1Q9UND3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.58■□□□□ 0.89
NPIPA1Q9UND3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.58■□□□□ 0.89
NPIPA1Q9UND3 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPIPA1Q9UND3 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.58■□□□□ 0.88
NPIPA1Q9UND3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NPIPA1Q9UND3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPIPA1Q9UND3 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPIPA1Q9UND3 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPIPA1Q9UND3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPIPA1Q9UND3 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPIPA1Q9UND3 AC091305.1-201ENST00000479476 895 ntBASIC20.57■□□□□ 0.88
NPIPA1Q9UND3 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.57■□□□□ 0.88
NPIPA1Q9UND3 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
NPIPA1Q9UND3 C17orf82-201ENST00000623772 1530 ntBASIC20.57■□□□□ 0.88
NPIPA1Q9UND3 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPIPA1Q9UND3 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPIPA1Q9UND3 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 AC241377.3-202ENST00000626088 1088 ntBASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 AC241585.3-202ENST00000628937 1088 ntBASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 AC245100.8-202ENST00000629247 1058 ntBASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.56■□□□□ 0.88
NPIPA1Q9UND3 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 AL138724.1-201ENST00000606771 1088 ntBASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 AC011298.3-201ENST00000615796 283 ntBASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
NPIPA1Q9UND3 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
NPIPA1Q9UND3 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPIPA1Q9UND3 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPIPA1Q9UND3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.54■□□□□ 0.88
NPIPA1Q9UND3 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.54■□□□□ 0.88
NPIPA1Q9UND3 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
NPIPA1Q9UND3 AC008764.7-201ENST00000593779 1081 ntBASIC20.54■□□□□ 0.88
NPIPA1Q9UND3 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.54■□□□□ 0.88
NPIPA1Q9UND3 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.54■□□□□ 0.88
NPIPA1Q9UND3 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPIPA1Q9UND3 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPIPA1Q9UND3 AC026271.2-201ENST00000428091 497 ntBASIC20.53■□□□□ 0.88
NPIPA1Q9UND3 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.53■□□□□ 0.88
NPIPA1Q9UND3 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
NPIPA1Q9UND3 CA15P2-201ENST00000611168 834 ntBASIC20.53■□□□□ 0.88
NPIPA1Q9UND3 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPIPA1Q9UND3 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPIPA1Q9UND3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.53■□□□□ 0.88
NPIPA1Q9UND3 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPIPA1Q9UND3 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPIPA1Q9UND3 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.53■□□□□ 0.88
NPIPA1Q9UND3 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 RASA4CP-201ENST00000424092 1398 ntBASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 AC006455.2-201ENST00000429931 906 ntBASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 AC009086.3-201ENST00000623486 1008 ntBASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.52■□□□□ 0.88
NPIPA1Q9UND3 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms