Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
DDX41Q9UJV9 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
DDX41Q9UJV9 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC25.68■■□□□ 1.7
DDX41Q9UJV9 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC25.68■■□□□ 1.7
DDX41Q9UJV9 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
DDX41Q9UJV9 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
DDX41Q9UJV9 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC25.68■■□□□ 1.7
DDX41Q9UJV9 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX41Q9UJV9 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX41Q9UJV9 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
DDX41Q9UJV9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
DDX41Q9UJV9 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX41Q9UJV9 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX41Q9UJV9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC25.67■■□□□ 1.7
DDX41Q9UJV9 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX41Q9UJV9 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX41Q9UJV9 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC25.67■■□□□ 1.7
DDX41Q9UJV9 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX41Q9UJV9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
DDX41Q9UJV9 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
DDX41Q9UJV9 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
DDX41Q9UJV9 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
DDX41Q9UJV9 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
DDX41Q9UJV9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
DDX41Q9UJV9 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
DDX41Q9UJV9 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
DDX41Q9UJV9 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
DDX41Q9UJV9 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
DDX41Q9UJV9 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
DDX41Q9UJV9 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
DDX41Q9UJV9 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC25.65■■□□□ 1.7
DDX41Q9UJV9 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
DDX41Q9UJV9 HYI-206ENST00000372434 1025 ntTSL 5 BASIC25.65■■□□□ 1.7
DDX41Q9UJV9 MIR939-201ENST00000401314 82 ntBASIC25.65■■□□□ 1.7
DDX41Q9UJV9 AF213884.3-201ENST00000563833 479 ntBASIC25.65■■□□□ 1.7
DDX41Q9UJV9 MIR4767-201ENST00000582827 78 ntBASIC25.65■■□□□ 1.7
DDX41Q9UJV9 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC25.65■■□□□ 1.7
DDX41Q9UJV9 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
DDX41Q9UJV9 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
DDX41Q9UJV9 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
DDX41Q9UJV9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.64■■□□□ 1.7
DDX41Q9UJV9 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.64■■□□□ 1.7
DDX41Q9UJV9 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
DDX41Q9UJV9 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
DDX41Q9UJV9 AP003733.4-201ENST00000623785 1697 ntBASIC25.64■■□□□ 1.69
DDX41Q9UJV9 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC25.64■■□□□ 1.69
DDX41Q9UJV9 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC25.64■■□□□ 1.69
DDX41Q9UJV9 USF2-207ENST00000595068 1612 ntTSL 5 BASIC25.63■■□□□ 1.69
DDX41Q9UJV9 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
DDX41Q9UJV9 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
DDX41Q9UJV9 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
DDX41Q9UJV9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
DDX41Q9UJV9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
DDX41Q9UJV9 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC25.63■■□□□ 1.69
DDX41Q9UJV9 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC25.63■■□□□ 1.69
DDX41Q9UJV9 AP001330.3-201ENST00000520123 633 ntBASIC25.63■■□□□ 1.69
DDX41Q9UJV9 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
DDX41Q9UJV9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
DDX41Q9UJV9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
DDX41Q9UJV9 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
DDX41Q9UJV9 ALDH1A3-203ENST00000557963 1670 ntBASIC25.62■■□□□ 1.69
DDX41Q9UJV9 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
DDX41Q9UJV9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
DDX41Q9UJV9 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
DDX41Q9UJV9 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC25.62■■□□□ 1.69
DDX41Q9UJV9 AL138724.1-201ENST00000606771 1088 ntBASIC25.62■■□□□ 1.69
DDX41Q9UJV9 AC241377.3-202ENST00000626088 1088 ntBASIC25.62■■□□□ 1.69
DDX41Q9UJV9 AC241585.3-202ENST00000628937 1088 ntBASIC25.62■■□□□ 1.69
DDX41Q9UJV9 AC245100.8-202ENST00000629247 1058 ntBASIC25.62■■□□□ 1.69
DDX41Q9UJV9 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC25.62■■□□□ 1.69
DDX41Q9UJV9 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
DDX41Q9UJV9 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
DDX41Q9UJV9 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
DDX41Q9UJV9 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
DDX41Q9UJV9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC25.61■■□□□ 1.69
DDX41Q9UJV9 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
DDX41Q9UJV9 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.61■■□□□ 1.69
DDX41Q9UJV9 AC011298.3-201ENST00000615796 283 ntBASIC25.61■■□□□ 1.69
DDX41Q9UJV9 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.61■■□□□ 1.69
DDX41Q9UJV9 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
DDX41Q9UJV9 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC25.61■■□□□ 1.69
DDX41Q9UJV9 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
DDX41Q9UJV9 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
DDX41Q9UJV9 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
DDX41Q9UJV9 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
DDX41Q9UJV9 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
DDX41Q9UJV9 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC25.6■■□□□ 1.69
DDX41Q9UJV9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.6■■□□□ 1.69
DDX41Q9UJV9 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
DDX41Q9UJV9 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC25.6■■□□□ 1.69
DDX41Q9UJV9 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC25.6■■□□□ 1.69
DDX41Q9UJV9 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
DDX41Q9UJV9 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
DDX41Q9UJV9 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
DDX41Q9UJV9 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
DDX41Q9UJV9 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
DDX41Q9UJV9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC25.59■■□□□ 1.69
DDX41Q9UJV9 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
DDX41Q9UJV9 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.59■■□□□ 1.69
DDX41Q9UJV9 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms