Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.65■■□□□ 1.06
CUEDC1Q9NWM3 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
CUEDC1Q9NWM3 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.64■■□□□ 1.05
CUEDC1Q9NWM3 AL136116.3-201ENST00000402907 1138 ntBASIC21.64■■□□□ 1.05
CUEDC1Q9NWM3 AC005837.3-201ENST00000612163 286 ntBASIC21.64■■□□□ 1.05
CUEDC1Q9NWM3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CUEDC1Q9NWM3 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.64■■□□□ 1.05
CUEDC1Q9NWM3 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CUEDC1Q9NWM3 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CUEDC1Q9NWM3 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CUEDC1Q9NWM3 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CUEDC1Q9NWM3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CUEDC1Q9NWM3 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
CUEDC1Q9NWM3 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.63■■□□□ 1.05
CUEDC1Q9NWM3 MIR4466-201ENST00000606121 54 ntBASIC21.63■■□□□ 1.05
CUEDC1Q9NWM3 C17orf82-201ENST00000623772 1530 ntBASIC21.63■■□□□ 1.05
CUEDC1Q9NWM3 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 AC133561.4-201ENST00000566112 224 ntBASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CUEDC1Q9NWM3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 AC092666.2-201ENST00000613287 246 ntBASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.61■■□□□ 1.05
CUEDC1Q9NWM3 AC092068.2-201ENST00000590491 1708 ntBASIC21.6■■□□□ 1.05
CUEDC1Q9NWM3 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
CUEDC1Q9NWM3 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
CUEDC1Q9NWM3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CUEDC1Q9NWM3 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CUEDC1Q9NWM3 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.6■■□□□ 1.05
CUEDC1Q9NWM3 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CUEDC1Q9NWM3 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
CUEDC1Q9NWM3 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.6■■□□□ 1.05
CUEDC1Q9NWM3 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CUEDC1Q9NWM3 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CUEDC1Q9NWM3 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 AC110285.6-201ENST00000617652 491 ntBASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
CUEDC1Q9NWM3 AC144652.1-201ENST00000609974 1624 ntBASIC21.58■■□□□ 1.05
CUEDC1Q9NWM3 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.58■■□□□ 1.05
CUEDC1Q9NWM3 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CUEDC1Q9NWM3 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.58■■□□□ 1.05
CUEDC1Q9NWM3 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CUEDC1Q9NWM3 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CUEDC1Q9NWM3 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CUEDC1Q9NWM3 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CUEDC1Q9NWM3 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
CUEDC1Q9NWM3 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.57■■□□□ 1.04
CUEDC1Q9NWM3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.57■■□□□ 1.04
CUEDC1Q9NWM3 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
CUEDC1Q9NWM3 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CUEDC1Q9NWM3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CUEDC1Q9NWM3 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
CUEDC1Q9NWM3 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms