Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TIMP4Q99727 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.57■□□□□ 0.88
TIMP4Q99727 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
TIMP4Q99727 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
TIMP4Q99727 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
TIMP4Q99727 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.56■□□□□ 0.88
TIMP4Q99727 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.56■□□□□ 0.88
TIMP4Q99727 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP4Q99727 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP4Q99727 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP4Q99727 MIR638-201ENST00000385237 100 ntBASIC20.56■□□□□ 0.88
TIMP4Q99727 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.56■□□□□ 0.88
TIMP4Q99727 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.56■□□□□ 0.88
TIMP4Q99727 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP4Q99727 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TIMP4Q99727 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
TIMP4Q99727 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TIMP4Q99727 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP4Q99727 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TIMP4Q99727 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TIMP4Q99727 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.55■□□□□ 0.88
TIMP4Q99727 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.55■□□□□ 0.88
TIMP4Q99727 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TIMP4Q99727 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TIMP4Q99727 SRD5A1P1-201ENST00000442297 786 ntBASIC20.55■□□□□ 0.88
TIMP4Q99727 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TIMP4Q99727 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TIMP4Q99727 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TIMP4Q99727 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TIMP4Q99727 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.54■□□□□ 0.88
TIMP4Q99727 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.54■□□□□ 0.88
TIMP4Q99727 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TIMP4Q99727 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.54■□□□□ 0.88
TIMP4Q99727 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TIMP4Q99727 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.53■□□□□ 0.88
TIMP4Q99727 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.53■□□□□ 0.88
TIMP4Q99727 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.53■□□□□ 0.88
TIMP4Q99727 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TIMP4Q99727 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TIMP4Q99727 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.53■□□□□ 0.88
TIMP4Q99727 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TIMP4Q99727 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TIMP4Q99727 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TIMP4Q99727 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TIMP4Q99727 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TIMP4Q99727 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
TIMP4Q99727 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.52■□□□□ 0.88
TIMP4Q99727 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TIMP4Q99727 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.52■□□□□ 0.88
TIMP4Q99727 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.52■□□□□ 0.88
TIMP4Q99727 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TIMP4Q99727 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TIMP4Q99727 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TIMP4Q99727 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TIMP4Q99727 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TIMP4Q99727 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TIMP4Q99727 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
TIMP4Q99727 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TIMP4Q99727 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.51■□□□□ 0.87
TIMP4Q99727 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.51■□□□□ 0.87
TIMP4Q99727 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TIMP4Q99727 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TIMP4Q99727 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TIMP4Q99727 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
TIMP4Q99727 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
TIMP4Q99727 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TIMP4Q99727 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TIMP4Q99727 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TIMP4Q99727 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
TIMP4Q99727 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
TIMP4Q99727 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
TIMP4Q99727 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TIMP4Q99727 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TIMP4Q99727 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TIMP4Q99727 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TIMP4Q99727 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TIMP4Q99727 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TIMP4Q99727 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
TIMP4Q99727 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.49■□□□□ 0.87
TIMP4Q99727 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.49■□□□□ 0.87
TIMP4Q99727 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
TIMP4Q99727 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
TIMP4Q99727 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.49■□□□□ 0.87
TIMP4Q99727 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.49■□□□□ 0.87
TIMP4Q99727 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
TIMP4Q99727 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TIMP4Q99727 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.48■□□□□ 0.87
TIMP4Q99727 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms