Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL12A1Q99715 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL12A1Q99715 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.88■□□□□ 0.77
COL12A1Q99715 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.88■□□□□ 0.77
COL12A1Q99715 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL12A1Q99715 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.88■□□□□ 0.77
COL12A1Q99715 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.88■□□□□ 0.77
COL12A1Q99715 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL12A1Q99715 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL12A1Q99715 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.88■□□□□ 0.77
COL12A1Q99715 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL12A1Q99715 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.88■□□□□ 0.77
COL12A1Q99715 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.87■□□□□ 0.77
COL12A1Q99715 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.87■□□□□ 0.77
COL12A1Q99715 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL12A1Q99715 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
COL12A1Q99715 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL12A1Q99715 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.87■□□□□ 0.77
COL12A1Q99715 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL12A1Q99715 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
COL12A1Q99715 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.87■□□□□ 0.77
COL12A1Q99715 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL12A1Q99715 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.87■□□□□ 0.77
COL12A1Q99715 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL12A1Q99715 FAM201B-201ENST00000458407 597 ntBASIC19.87■□□□□ 0.77
COL12A1Q99715 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.87■□□□□ 0.77
COL12A1Q99715 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.87■□□□□ 0.77
COL12A1Q99715 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.87■□□□□ 0.77
COL12A1Q99715 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL12A1Q99715 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
COL12A1Q99715 SMUG1P1-201ENST00000590640 811 ntBASIC19.86■□□□□ 0.77
COL12A1Q99715 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL12A1Q99715 AC011767.1-201ENST00000617410 1153 ntBASIC19.86■□□□□ 0.77
COL12A1Q99715 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
COL12A1Q99715 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.86■□□□□ 0.77
COL12A1Q99715 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.86■□□□□ 0.77
COL12A1Q99715 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.86■□□□□ 0.77
COL12A1Q99715 GCSHP5-201ENST00000443090 522 ntBASIC19.86■□□□□ 0.77
COL12A1Q99715 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.86■□□□□ 0.77
COL12A1Q99715 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.86■□□□□ 0.77
COL12A1Q99715 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL12A1Q99715 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.85■□□□□ 0.77
COL12A1Q99715 AC097639.1-201ENST00000565519 1891 ntBASIC19.85■□□□□ 0.77
COL12A1Q99715 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.85■□□□□ 0.77
COL12A1Q99715 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL12A1Q99715 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL12A1Q99715 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL12A1Q99715 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
COL12A1Q99715 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
COL12A1Q99715 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL12A1Q99715 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL12A1Q99715 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.84■□□□□ 0.77
COL12A1Q99715 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL12A1Q99715 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL12A1Q99715 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.84■□□□□ 0.77
COL12A1Q99715 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.84■□□□□ 0.77
COL12A1Q99715 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.84■□□□□ 0.77
COL12A1Q99715 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.84■□□□□ 0.77
COL12A1Q99715 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
COL12A1Q99715 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.84■□□□□ 0.77
COL12A1Q99715 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL12A1Q99715 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL12A1Q99715 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.83■□□□□ 0.76
COL12A1Q99715 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL12A1Q99715 SHD-204ENST00000599689 1729 ntTSL 5 BASIC19.83■□□□□ 0.76
COL12A1Q99715 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.82■□□□□ 0.76
COL12A1Q99715 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL12A1Q99715 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.82■□□□□ 0.76
COL12A1Q99715 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.82■□□□□ 0.76
COL12A1Q99715 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL12A1Q99715 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL12A1Q99715 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL12A1Q99715 POU5F1P3-201ENST00000428824 1078 ntBASIC19.82■□□□□ 0.76
COL12A1Q99715 pRNA.6-201ENST00000610482 90 ntBASIC19.82■□□□□ 0.76
COL12A1Q99715 pRNA.5-201ENST00000612139 90 ntBASIC19.82■□□□□ 0.76
COL12A1Q99715 pRNA.11-201ENST00000618423 90 ntBASIC19.82■□□□□ 0.76
COL12A1Q99715 pRNA.13-201ENST00000619112 90 ntBASIC19.82■□□□□ 0.76
COL12A1Q99715 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL12A1Q99715 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL12A1Q99715 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL12A1Q99715 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.82■□□□□ 0.76
COL12A1Q99715 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL12A1Q99715 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL12A1Q99715 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL12A1Q99715 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL12A1Q99715 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.81■□□□□ 0.76
COL12A1Q99715 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL12A1Q99715 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL12A1Q99715 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.81■□□□□ 0.76
COL12A1Q99715 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL12A1Q99715 MIR1224-201ENST00000408193 85 ntBASIC19.81■□□□□ 0.76
COL12A1Q99715 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.81■□□□□ 0.76
COL12A1Q99715 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
COL12A1Q99715 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL12A1Q99715 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL12A1Q99715 KRT18P29-201ENST00000397031 1267 ntBASIC19.8■□□□□ 0.76
COL12A1Q99715 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.8■□□□□ 0.76
COL12A1Q99715 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL12A1Q99715 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL12A1Q99715 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms