Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CDX2Q99626 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CDX2Q99626 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
CDX2Q99626 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
CDX2Q99626 MFF-208ENST00000409616 1247 ntTSL 5 BASIC23.93■■□□□ 1.42
CDX2Q99626 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CDX2Q99626 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC23.93■■□□□ 1.42
CDX2Q99626 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CDX2Q99626 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
CDX2Q99626 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
CDX2Q99626 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CDX2Q99626 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.92■■□□□ 1.42
CDX2Q99626 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CDX2Q99626 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
CDX2Q99626 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.92■■□□□ 1.42
CDX2Q99626 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CDX2Q99626 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CDX2Q99626 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
CDX2Q99626 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC23.91■■□□□ 1.42
CDX2Q99626 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CDX2Q99626 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
CDX2Q99626 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.91■■□□□ 1.42
CDX2Q99626 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CDX2Q99626 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CDX2Q99626 PRORSD1P-201ENST00000295112 541 ntBASIC23.9■■□□□ 1.42
CDX2Q99626 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC23.9■■□□□ 1.42
CDX2Q99626 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CDX2Q99626 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC23.9■■□□□ 1.42
CDX2Q99626 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC23.9■■□□□ 1.42
CDX2Q99626 MAZ-216ENST00000616501 991 ntTSL 5 BASIC23.9■■□□□ 1.42
CDX2Q99626 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.9■■□□□ 1.42
CDX2Q99626 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CDX2Q99626 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
CDX2Q99626 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
CDX2Q99626 SLC29A4P1-201ENST00000398760 971 ntBASIC23.89■■□□□ 1.41
CDX2Q99626 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.89■■□□□ 1.41
CDX2Q99626 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC23.89■■□□□ 1.41
CDX2Q99626 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CDX2Q99626 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC23.89■■□□□ 1.41
CDX2Q99626 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CDX2Q99626 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CDX2Q99626 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CDX2Q99626 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CDX2Q99626 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC23.88■■□□□ 1.41
CDX2Q99626 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CDX2Q99626 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CDX2Q99626 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CDX2Q99626 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CDX2Q99626 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC23.88■■□□□ 1.41
CDX2Q99626 RPS2P52-201ENST00000469610 820 ntBASIC23.88■■□□□ 1.41
CDX2Q99626 CBFB-203ENST00000561924 584 ntTSL 5 BASIC23.88■■□□□ 1.41
CDX2Q99626 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CDX2Q99626 ABCB10P1-201ENST00000614297 2181 ntBASIC23.87■■□□□ 1.41
CDX2Q99626 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CDX2Q99626 OR2I1P-207ENST00000453522 948 ntBASIC23.87■■□□□ 1.41
CDX2Q99626 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.87■■□□□ 1.41
CDX2Q99626 AC133041.1-202ENST00000642053 222 ntBASIC23.87■■□□□ 1.41
CDX2Q99626 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
CDX2Q99626 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.87■■□□□ 1.41
CDX2Q99626 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.86■■□□□ 1.41
CDX2Q99626 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.86■■□□□ 1.41
CDX2Q99626 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.86■■□□□ 1.41
CDX2Q99626 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CDX2Q99626 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CDX2Q99626 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CDX2Q99626 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
CDX2Q99626 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC23.86■■□□□ 1.41
CDX2Q99626 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
CDX2Q99626 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.86■■□□□ 1.41
CDX2Q99626 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CDX2Q99626 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.85■■□□□ 1.41
CDX2Q99626 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC23.85■■□□□ 1.41
CDX2Q99626 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
CDX2Q99626 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC23.85■■□□□ 1.41
CDX2Q99626 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.85■■□□□ 1.41
CDX2Q99626 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC23.85■■□□□ 1.41
CDX2Q99626 MFSD11-216ENST00000590393 1141 ntBASIC23.85■■□□□ 1.41
CDX2Q99626 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC23.85■■□□□ 1.41
CDX2Q99626 AP006294.2-201ENST00000641667 209 ntBASIC23.85■■□□□ 1.41
CDX2Q99626 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.85■■□□□ 1.41
CDX2Q99626 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CDX2Q99626 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.84■■□□□ 1.41
CDX2Q99626 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.84■■□□□ 1.41
CDX2Q99626 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CDX2Q99626 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CDX2Q99626 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
CDX2Q99626 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CDX2Q99626 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC23.84■■□□□ 1.41
CDX2Q99626 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CDX2Q99626 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CDX2Q99626 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC23.84■■□□□ 1.41
CDX2Q99626 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC23.84■■□□□ 1.41
CDX2Q99626 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CDX2Q99626 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CDX2Q99626 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CDX2Q99626 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
CDX2Q99626 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC23.84■■□□□ 1.41
CDX2Q99626 TESC-206ENST00000541210 936 ntTSL 3 BASIC23.84■■□□□ 1.41
CDX2Q99626 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
CDX2Q99626 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC23.84■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms