Protein–RNA interactions for Protein: Q96NZ1

FOXN4, Forkhead box protein N4, humanhuman

Predictions only

Length 517 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4Q96NZ1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN4Q96NZ1 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN4Q96NZ1 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN4Q96NZ1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.02■□□□□ 0.8
FOXN4Q96NZ1 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.02■□□□□ 0.8
FOXN4Q96NZ1 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN4Q96NZ1 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
FOXN4Q96NZ1 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
FOXN4Q96NZ1 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
FOXN4Q96NZ1 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
FOXN4Q96NZ1 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
FOXN4Q96NZ1 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.79
FOXN4Q96NZ1 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.01■□□□□ 0.79
FOXN4Q96NZ1 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN4Q96NZ1 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN4Q96NZ1 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN4Q96NZ1 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN4Q96NZ1 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.01■□□□□ 0.79
FOXN4Q96NZ1 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.01■□□□□ 0.79
FOXN4Q96NZ1 AC137630.3-201ENST00000607245 391 ntBASIC20.01■□□□□ 0.79
FOXN4Q96NZ1 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.01■□□□□ 0.79
FOXN4Q96NZ1 AC079630.1-202ENST00000618127 1840 ntBASIC20.01■□□□□ 0.79
FOXN4Q96NZ1 C1orf229-201ENST00000623686 2258 ntBASIC20.01■□□□□ 0.79
FOXN4Q96NZ1 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20■□□□□ 0.79
FOXN4Q96NZ1 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN4Q96NZ1 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN4Q96NZ1 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN4Q96NZ1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20■□□□□ 0.79
FOXN4Q96NZ1 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20■□□□□ 0.79
FOXN4Q96NZ1 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20■□□□□ 0.79
FOXN4Q96NZ1 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN4Q96NZ1 GRAMD4P7-201ENST00000578182 1232 ntBASIC20■□□□□ 0.79
FOXN4Q96NZ1 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20■□□□□ 0.79
FOXN4Q96NZ1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20■□□□□ 0.79
FOXN4Q96NZ1 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20■□□□□ 0.79
FOXN4Q96NZ1 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20■□□□□ 0.79
FOXN4Q96NZ1 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN4Q96NZ1 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN4Q96NZ1 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20■□□□□ 0.79
FOXN4Q96NZ1 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20■□□□□ 0.79
FOXN4Q96NZ1 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20■□□□□ 0.79
FOXN4Q96NZ1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20■□□□□ 0.79
FOXN4Q96NZ1 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20■□□□□ 0.79
FOXN4Q96NZ1 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
FOXN4Q96NZ1 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
FOXN4Q96NZ1 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXN4Q96NZ1 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
FOXN4Q96NZ1 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.99■□□□□ 0.79
FOXN4Q96NZ1 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXN4Q96NZ1 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
FOXN4Q96NZ1 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXN4Q96NZ1 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.95■□□□□ 0.78
FOXN4Q96NZ1 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
FOXN4Q96NZ1 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN4Q96NZ1 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN4Q96NZ1 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN4Q96NZ1 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN4Q96NZ1 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms