Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
PTCHD1Q96NR3 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
PTCHD1Q96NR3 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD1Q96NR3 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
PTCHD1Q96NR3 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.09■□□□□ 0.97
PTCHD1Q96NR3 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
PTCHD1Q96NR3 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD1Q96NR3 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PTCHD1Q96NR3 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.08■□□□□ 0.97
PTCHD1Q96NR3 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PTCHD1Q96NR3 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.08■□□□□ 0.97
PTCHD1Q96NR3 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.97
PTCHD1Q96NR3 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PTCHD1Q96NR3 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
PTCHD1Q96NR3 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.08■□□□□ 0.96
PTCHD1Q96NR3 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PTCHD1Q96NR3 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.08■□□□□ 0.96
PTCHD1Q96NR3 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PTCHD1Q96NR3 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.08■□□□□ 0.96
PTCHD1Q96NR3 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 DUX4L19-201ENST00000557448 1267 ntBASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD1Q96NR3 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD1Q96NR3 SYT6-210ENST00000641643 1587 ntBASIC21.06■□□□□ 0.96
PTCHD1Q96NR3 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.06■□□□□ 0.96
PTCHD1Q96NR3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD1Q96NR3 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
PTCHD1Q96NR3 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD1Q96NR3 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
PTCHD1Q96NR3 UNC93B3-201ENST00000308076 687 ntBASIC21.06■□□□□ 0.96
PTCHD1Q96NR3 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD1Q96NR3 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.06■□□□□ 0.96
PTCHD1Q96NR3 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD1Q96NR3 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 AL139246.5-201ENST00000606645 996 ntBASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 AC009086.3-201ENST00000623486 1008 ntBASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.05■□□□□ 0.96
PTCHD1Q96NR3 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 AC144652.1-201ENST00000609974 1624 ntBASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 AC110285.6-201ENST00000617652 491 ntBASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.04■□□□□ 0.96
PTCHD1Q96NR3 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 FP325331.1-202ENST00000623531 1380 ntBASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 AC006455.2-201ENST00000429931 906 ntBASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD1Q96NR3 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD1Q96NR3 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD1Q96NR3 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD1Q96NR3 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD1Q96NR3 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD1Q96NR3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD1Q96NR3 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.02■□□□□ 0.96
PTCHD1Q96NR3 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
PTCHD1Q96NR3 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD1Q96NR3 PBX2P1-201ENST00000493219 1291 ntBASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms