Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
BEST3Q8N1M1 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.74■□□□□ 0.91
BEST3Q8N1M1 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.74■□□□□ 0.91
BEST3Q8N1M1 AC136469.2-201ENST00000623944 1028 ntBASIC20.74■□□□□ 0.91
BEST3Q8N1M1 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
BEST3Q8N1M1 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BEST3Q8N1M1 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BEST3Q8N1M1 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 AC008764.7-201ENST00000593779 1081 ntBASIC20.73■□□□□ 0.91
BEST3Q8N1M1 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BEST3Q8N1M1 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 AC027682.1-201ENST00000562846 899 ntBASIC20.72■□□□□ 0.91
BEST3Q8N1M1 pRNA.6-201ENST00000610482 90 ntBASIC20.72■□□□□ 0.91
BEST3Q8N1M1 pRNA.5-201ENST00000612139 90 ntBASIC20.72■□□□□ 0.91
BEST3Q8N1M1 pRNA.11-201ENST00000618423 90 ntBASIC20.72■□□□□ 0.91
BEST3Q8N1M1 pRNA.13-201ENST00000619112 90 ntBASIC20.72■□□□□ 0.91
BEST3Q8N1M1 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 AC141586.4-201ENST00000624558 1573 ntBASIC20.72■□□□□ 0.91
BEST3Q8N1M1 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
BEST3Q8N1M1 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
BEST3Q8N1M1 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.71■□□□□ 0.91
BEST3Q8N1M1 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
BEST3Q8N1M1 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.71■□□□□ 0.91
BEST3Q8N1M1 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
BEST3Q8N1M1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.71■□□□□ 0.91
BEST3Q8N1M1 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.71■□□□□ 0.91
BEST3Q8N1M1 CA15P2-201ENST00000611168 834 ntBASIC20.71■□□□□ 0.91
BEST3Q8N1M1 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BEST3Q8N1M1 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BEST3Q8N1M1 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.71■□□□□ 0.91
BEST3Q8N1M1 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BEST3Q8N1M1 RASA4CP-201ENST00000424092 1398 ntBASIC20.71■□□□□ 0.91
BEST3Q8N1M1 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.71■□□□□ 0.91
BEST3Q8N1M1 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
BEST3Q8N1M1 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
BEST3Q8N1M1 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
BEST3Q8N1M1 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.7■□□□□ 0.9
BEST3Q8N1M1 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.7■□□□□ 0.9
BEST3Q8N1M1 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.7■□□□□ 0.9
BEST3Q8N1M1 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.7■□□□□ 0.9
BEST3Q8N1M1 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
BEST3Q8N1M1 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BEST3Q8N1M1 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BEST3Q8N1M1 AC099791.1-201ENST00000416440 715 ntBASIC20.69■□□□□ 0.9
BEST3Q8N1M1 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
BEST3Q8N1M1 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.69■□□□□ 0.9
BEST3Q8N1M1 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BEST3Q8N1M1 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.68■□□□□ 0.9
BEST3Q8N1M1 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BEST3Q8N1M1 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BEST3Q8N1M1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BEST3Q8N1M1 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
BEST3Q8N1M1 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BEST3Q8N1M1 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.68■□□□□ 0.9
BEST3Q8N1M1 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
BEST3Q8N1M1 LINC01124-201ENST00000409786 2117 ntBASIC20.68■□□□□ 0.9
BEST3Q8N1M1 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BEST3Q8N1M1 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 AL139125.2-201ENST00000623134 1869 ntBASIC20.67■□□□□ 0.9
BEST3Q8N1M1 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
BEST3Q8N1M1 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms