Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
NHLRC1Q6VVB1 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NHLRC1Q6VVB1 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NHLRC1Q6VVB1 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
NHLRC1Q6VVB1 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
NHLRC1Q6VVB1 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
NHLRC1Q6VVB1 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
NHLRC1Q6VVB1 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.09■□□□□ 0.81
NHLRC1Q6VVB1 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
NHLRC1Q6VVB1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NHLRC1Q6VVB1 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.09■□□□□ 0.81
NHLRC1Q6VVB1 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
NHLRC1Q6VVB1 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NHLRC1Q6VVB1 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
NHLRC1Q6VVB1 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NHLRC1Q6VVB1 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.08■□□□□ 0.81
NHLRC1Q6VVB1 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
NHLRC1Q6VVB1 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NHLRC1Q6VVB1 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
NHLRC1Q6VVB1 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
NHLRC1Q6VVB1 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.08■□□□□ 0.8
NHLRC1Q6VVB1 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NHLRC1Q6VVB1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 AC079630.1-202ENST00000618127 1840 ntBASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 MTDHP2-201ENST00000601468 714 ntBASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.07■□□□□ 0.8
NHLRC1Q6VVB1 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 TSPY9P-201ENST00000440215 945 ntBASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 TSPY11P-201ENST00000442607 1045 ntBASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NHLRC1Q6VVB1 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
NHLRC1Q6VVB1 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NHLRC1Q6VVB1 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NHLRC1Q6VVB1 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NHLRC1Q6VVB1 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NHLRC1Q6VVB1 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NHLRC1Q6VVB1 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NHLRC1Q6VVB1 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NHLRC1Q6VVB1 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NHLRC1Q6VVB1 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NHLRC1Q6VVB1 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NHLRC1Q6VVB1 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
NHLRC1Q6VVB1 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
NHLRC1Q6VVB1 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 MIR6724-1-201ENST00000616420 92 ntBASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 MIR6724-2-201ENST00000616483 92 ntBASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 MIR6724-4-201ENST00000617390 92 ntBASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 MIR6724-3-201ENST00000622482 92 ntBASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NHLRC1Q6VVB1 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
NHLRC1Q6VVB1 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
NHLRC1Q6VVB1 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.02■□□□□ 0.8
NHLRC1Q6VVB1 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms