Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC58Q4VC31 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC58Q4VC31 ESRRAP2-201ENST00000418437 1549 ntBASIC19.93■□□□□ 0.78
CCDC58Q4VC31 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC58Q4VC31 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC58Q4VC31 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC58Q4VC31 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC58Q4VC31 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC58Q4VC31 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC58Q4VC31 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC58Q4VC31 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC58Q4VC31 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC58Q4VC31 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CCDC58Q4VC31 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC58Q4VC31 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC58Q4VC31 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC58Q4VC31 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC58Q4VC31 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC58Q4VC31 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC58Q4VC31 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC58Q4VC31 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC58Q4VC31 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC58Q4VC31 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC58Q4VC31 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC58Q4VC31 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC58Q4VC31 AC011551.1-201ENST00000614101 683 ntBASIC19.91■□□□□ 0.78
CCDC58Q4VC31 AC137767.1-201ENST00000602918 1920 ntBASIC19.91■□□□□ 0.78
CCDC58Q4VC31 AC092667.1-201ENST00000434301 2586 ntBASIC19.91■□□□□ 0.78
CCDC58Q4VC31 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC58Q4VC31 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC58Q4VC31 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC58Q4VC31 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
CCDC58Q4VC31 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CCDC58Q4VC31 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC58Q4VC31 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CCDC58Q4VC31 MIR4449-201ENST00000578365 66 ntBASIC19.9■□□□□ 0.78
CCDC58Q4VC31 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC58Q4VC31 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC58Q4VC31 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC58Q4VC31 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC58Q4VC31 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
CCDC58Q4VC31 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC58Q4VC31 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC58Q4VC31 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.89■□□□□ 0.78
CCDC58Q4VC31 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC58Q4VC31 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC58Q4VC31 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC58Q4VC31 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CCDC58Q4VC31 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
CCDC58Q4VC31 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC58Q4VC31 MIR6765-201ENST00000614092 87 ntBASIC19.89■□□□□ 0.77
CCDC58Q4VC31 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC58Q4VC31 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC58Q4VC31 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC58Q4VC31 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC58Q4VC31 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC58Q4VC31 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC58Q4VC31 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC58Q4VC31 AC131274.2-201ENST00000580697 1507 ntBASIC19.88■□□□□ 0.77
CCDC58Q4VC31 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC58Q4VC31 SPCS2P3-201ENST00000500401 656 ntBASIC19.88■□□□□ 0.77
CCDC58Q4VC31 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC58Q4VC31 AC242852.2-201ENST00000615738 1807 ntBASIC19.88■□□□□ 0.77
CCDC58Q4VC31 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC58Q4VC31 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC58Q4VC31 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC58Q4VC31 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC58Q4VC31 LONRF2P2-201ENST00000439212 571 ntBASIC19.87■□□□□ 0.77
CCDC58Q4VC31 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC58Q4VC31 AL592293.1-201ENST00000502889 1188 ntBASIC19.87■□□□□ 0.77
CCDC58Q4VC31 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC58Q4VC31 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC58Q4VC31 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.86■□□□□ 0.77
CCDC58Q4VC31 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC58Q4VC31 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC58Q4VC31 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC58Q4VC31 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC58Q4VC31 RNF126P1-201ENST00000567452 1320 ntBASIC19.86■□□□□ 0.77
CCDC58Q4VC31 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
CCDC58Q4VC31 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC58Q4VC31 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC58Q4VC31 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC58Q4VC31 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC58Q4VC31 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CCDC58Q4VC31 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CCDC58Q4VC31 AL391422.3-201ENST00000603791 2761 ntBASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms