Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 IRS3P-201ENST00000223076 1006 ntBASIC18.98■□□□□ 0.63
PDLIM4P50479 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PDLIM4P50479 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.98■□□□□ 0.63
PDLIM4P50479 AC233992.3-201ENST00000607491 485 ntBASIC18.98■□□□□ 0.63
PDLIM4P50479 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
PDLIM4P50479 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
PDLIM4P50479 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
PDLIM4P50479 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
PDLIM4P50479 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PDLIM4P50479 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC18.98■□□□□ 0.63
PDLIM4P50479 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.98■□□□□ 0.63
PDLIM4P50479 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PDLIM4P50479 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PDLIM4P50479 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.97■□□□□ 0.63
PDLIM4P50479 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PDLIM4P50479 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PDLIM4P50479 BX842568.3-201ENST00000418104 571 ntBASIC18.97■□□□□ 0.63
PDLIM4P50479 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PDLIM4P50479 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.97■□□□□ 0.63
PDLIM4P50479 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.97■□□□□ 0.63
PDLIM4P50479 AC092666.2-201ENST00000613287 246 ntBASIC18.97■□□□□ 0.63
PDLIM4P50479 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
PDLIM4P50479 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.97■□□□□ 0.63
PDLIM4P50479 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PDLIM4P50479 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PDLIM4P50479 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
PDLIM4P50479 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
PDLIM4P50479 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.96■□□□□ 0.63
PDLIM4P50479 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.96■□□□□ 0.63
PDLIM4P50479 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.96■□□□□ 0.63
PDLIM4P50479 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.96■□□□□ 0.63
PDLIM4P50479 pRNA.6-201ENST00000610482 90 ntBASIC18.96■□□□□ 0.63
PDLIM4P50479 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM4P50479 pRNA.5-201ENST00000612139 90 ntBASIC18.96■□□□□ 0.63
PDLIM4P50479 pRNA.11-201ENST00000618423 90 ntBASIC18.96■□□□□ 0.63
PDLIM4P50479 pRNA.13-201ENST00000619112 90 ntBASIC18.96■□□□□ 0.63
PDLIM4P50479 AC141586.4-201ENST00000624558 1573 ntBASIC18.96■□□□□ 0.63
PDLIM4P50479 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM4P50479 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM4P50479 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC18.95■□□□□ 0.62
PDLIM4P50479 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM4P50479 AP003733.4-201ENST00000623785 1697 ntBASIC18.95■□□□□ 0.62
PDLIM4P50479 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.95■□□□□ 0.62
PDLIM4P50479 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM4P50479 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM4P50479 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM4P50479 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM4P50479 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM4P50479 AC104564.3-201ENST00000582367 638 ntBASIC18.95■□□□□ 0.62
PDLIM4P50479 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
PDLIM4P50479 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
PDLIM4P50479 MIR6821-201ENST00000617625 74 ntBASIC18.95■□□□□ 0.62
PDLIM4P50479 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.95■□□□□ 0.62
PDLIM4P50479 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM4P50479 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.95■□□□□ 0.62
PDLIM4P50479 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM4P50479 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM4P50479 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PDLIM4P50479 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM4P50479 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM4P50479 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
PDLIM4P50479 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM4P50479 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.94■□□□□ 0.62
PDLIM4P50479 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.94■□□□□ 0.62
PDLIM4P50479 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.94■□□□□ 0.62
PDLIM4P50479 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM4P50479 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.94■□□□□ 0.62
PDLIM4P50479 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM4P50479 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.94■□□□□ 0.62
PDLIM4P50479 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM4P50479 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PDLIM4P50479 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM4P50479 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM4P50479 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM4P50479 TMEM202-AS1-202ENST00000565181 2325 ntBASIC18.93■□□□□ 0.62
PDLIM4P50479 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM4P50479 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
PDLIM4P50479 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.93■□□□□ 0.62
PDLIM4P50479 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.93■□□□□ 0.62
PDLIM4P50479 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.93■□□□□ 0.62
PDLIM4P50479 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM4P50479 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC18.93■□□□□ 0.62
PDLIM4P50479 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.92■□□□□ 0.62
PDLIM4P50479 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
PDLIM4P50479 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM4P50479 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM4P50479 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.92■□□□□ 0.62
PDLIM4P50479 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM4P50479 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC18.92■□□□□ 0.62
PDLIM4P50479 AC097381.1-201ENST00000429019 1296 ntBASIC18.92■□□□□ 0.62
PDLIM4P50479 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.92■□□□□ 0.62
PDLIM4P50479 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM4P50479 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.92■□□□□ 0.62
PDLIM4P50479 AC126544.1-201ENST00000580842 1059 ntBASIC18.92■□□□□ 0.62
PDLIM4P50479 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.92■□□□□ 0.62
PDLIM4P50479 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM4P50479 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.92■□□□□ 0.62
PDLIM4P50479 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM4P50479 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.92■□□□□ 0.62
PDLIM4P50479 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms