Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HNF4AP41235 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.68■■□□□ 1.06
HNF4AP41235 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
HNF4AP41235 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HNF4AP41235 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.68■■□□□ 1.06
HNF4AP41235 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HNF4AP41235 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
HNF4AP41235 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.68■■□□□ 1.06
HNF4AP41235 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
HNF4AP41235 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.68■■□□□ 1.06
HNF4AP41235 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.68■■□□□ 1.06
HNF4AP41235 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HNF4AP41235 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
HNF4AP41235 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HNF4AP41235 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
HNF4AP41235 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.67■■□□□ 1.06
HNF4AP41235 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
HNF4AP41235 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.67■■□□□ 1.06
HNF4AP41235 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.66■■□□□ 1.06
HNF4AP41235 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HNF4AP41235 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HNF4AP41235 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HNF4AP41235 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.66■■□□□ 1.06
HNF4AP41235 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.66■■□□□ 1.06
HNF4AP41235 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
HNF4AP41235 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
HNF4AP41235 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HNF4AP41235 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HNF4AP41235 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.65■■□□□ 1.06
HNF4AP41235 AL356441.2-201ENST00000443009 864 ntBASIC21.65■■□□□ 1.06
HNF4AP41235 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
HNF4AP41235 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
HNF4AP41235 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HNF4AP41235 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
HNF4AP41235 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HNF4AP41235 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
HNF4AP41235 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
HNF4AP41235 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HNF4AP41235 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.64■■□□□ 1.05
HNF4AP41235 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.64■■□□□ 1.05
HNF4AP41235 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HNF4AP41235 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.64■■□□□ 1.05
HNF4AP41235 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
HNF4AP41235 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HNF4AP41235 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
HNF4AP41235 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HNF4AP41235 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
HNF4AP41235 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.63■■□□□ 1.05
HNF4AP41235 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HNF4AP41235 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.63■■□□□ 1.05
HNF4AP41235 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
HNF4AP41235 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.63■■□□□ 1.05
HNF4AP41235 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.63■■□□□ 1.05
HNF4AP41235 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
HNF4AP41235 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
HNF4AP41235 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HNF4AP41235 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
HNF4AP41235 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
HNF4AP41235 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
HNF4AP41235 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
HNF4AP41235 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.62■■□□□ 1.05
HNF4AP41235 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HNF4AP41235 MIR6724-1-201ENST00000616420 92 ntBASIC21.62■■□□□ 1.05
HNF4AP41235 MIR6724-2-201ENST00000616483 92 ntBASIC21.62■■□□□ 1.05
HNF4AP41235 MIR6724-4-201ENST00000617390 92 ntBASIC21.62■■□□□ 1.05
HNF4AP41235 MIR6724-3-201ENST00000622482 92 ntBASIC21.62■■□□□ 1.05
HNF4AP41235 C9orf163-202ENST00000624034 2573 ntBASIC21.62■■□□□ 1.05
HNF4AP41235 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HNF4AP41235 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HNF4AP41235 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
HNF4AP41235 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.61■■□□□ 1.05
HNF4AP41235 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
HNF4AP41235 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HNF4AP41235 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.61■■□□□ 1.05
HNF4AP41235 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.61■■□□□ 1.05
HNF4AP41235 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.61■■□□□ 1.05
HNF4AP41235 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.61■■□□□ 1.05
HNF4AP41235 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.61■■□□□ 1.05
HNF4AP41235 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.61■■□□□ 1.05
HNF4AP41235 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.61■■□□□ 1.05
HNF4AP41235 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HNF4AP41235 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.61■■□□□ 1.05
HNF4AP41235 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HNF4AP41235 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
HNF4AP41235 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
HNF4AP41235 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.6■■□□□ 1.05
HNF4AP41235 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HNF4AP41235 AC144652.1-201ENST00000609974 1624 ntBASIC21.6■■□□□ 1.05
HNF4AP41235 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.6■■□□□ 1.05
HNF4AP41235 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.6■■□□□ 1.05
HNF4AP41235 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HNF4AP41235 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.6■■□□□ 1.05
HNF4AP41235 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HNF4AP41235 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.6■■□□□ 1.05
HNF4AP41235 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HNF4AP41235 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
HNF4AP41235 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HNF4AP41235 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HNF4AP41235 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HNF4AP41235 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms