Protein–RNA interactions for Protein: P09661

SNRPA1, U2 small nuclear ribonucleoprotein A', humanhuman

Known RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1P09661 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC28.81■■■□□ 2.2
SNRPA1P09661 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC28.81■■■□□ 2.2
SNRPA1P09661 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
SNRPA1P09661 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC28.81■■■□□ 2.2
SNRPA1P09661 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC28.8■■■□□ 2.2
SNRPA1P09661 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC28.8■■■□□ 2.2
SNRPA1P09661 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SNRPA1P09661 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SNRPA1P09661 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SNRPA1P09661 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
SNRPA1P09661 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SNRPA1P09661 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
SNRPA1P09661 AK1-201ENST00000223836 736 ntTSL 3 BASIC28.8■■■□□ 2.2
SNRPA1P09661 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC28.8■■■□□ 2.2
SNRPA1P09661 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC28.8■■■□□ 2.2
SNRPA1P09661 SP2-202ENST00000613139 908 ntTSL 5 BASIC28.8■■■□□ 2.2
SNRPA1P09661 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC28.8■■■□□ 2.2
SNRPA1P09661 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC28.8■■■□□ 2.2
SNRPA1P09661 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SNRPA1P09661 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SNRPA1P09661 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SNRPA1P09661 AC144652.1-201ENST00000609974 1624 ntBASIC28.8■■■□□ 2.2
SNRPA1P09661 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SNRPA1P09661 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC28.79■■■□□ 2.2
SNRPA1P09661 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SNRPA1P09661 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC28.79■■■□□ 2.2
SNRPA1P09661 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
SNRPA1P09661 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC28.79■■■□□ 2.2
SNRPA1P09661 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SNRPA1P09661 AICDA-202ENST00000537228 667 ntTSL 5 BASIC28.79■■■□□ 2.2
SNRPA1P09661 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC28.79■■■□□ 2.2
SNRPA1P09661 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC28.79■■■□□ 2.2
SNRPA1P09661 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
SNRPA1P09661 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC28.79■■■□□ 2.2
SNRPA1P09661 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SNRPA1P09661 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC28.78■■■□□ 2.2
SNRPA1P09661 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC28.78■■■□□ 2.2
SNRPA1P09661 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SNRPA1P09661 AL162430.1-201ENST00000480705 870 ntBASIC28.78■■■□□ 2.2
SNRPA1P09661 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC28.78■■■□□ 2.2
SNRPA1P09661 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SNRPA1P09661 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
SNRPA1P09661 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
SNRPA1P09661 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC28.77■■■□□ 2.2
SNRPA1P09661 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC28.77■■■□□ 2.2
SNRPA1P09661 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
SNRPA1P09661 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC28.77■■■□□ 2.2
SNRPA1P09661 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC28.77■■■□□ 2.2
SNRPA1P09661 LINC01529-204ENST00000636474 1715 ntBASIC28.77■■■□□ 2.2
SNRPA1P09661 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SNRPA1P09661 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
SNRPA1P09661 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
SNRPA1P09661 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC28.76■■■□□ 2.2
SNRPA1P09661 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SNRPA1P09661 PARL-206ENST00000435888 1098 ntTSL 5 BASIC28.76■■■□□ 2.19
SNRPA1P09661 IGHV3-19-201ENST00000521488 291 ntBASIC28.76■■■□□ 2.19
SNRPA1P09661 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC28.76■■■□□ 2.19
SNRPA1P09661 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SNRPA1P09661 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SNRPA1P09661 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SNRPA1P09661 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
SNRPA1P09661 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SNRPA1P09661 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SNRPA1P09661 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
SNRPA1P09661 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC28.75■■■□□ 2.19
SNRPA1P09661 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SNRPA1P09661 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SNRPA1P09661 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC28.75■■■□□ 2.19
SNRPA1P09661 OR2I1P-207ENST00000453522 948 ntBASIC28.75■■■□□ 2.19
SNRPA1P09661 AC010525.1-201ENST00000585559 441 ntBASIC28.75■■■□□ 2.19
SNRPA1P09661 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
SNRPA1P09661 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SNRPA1P09661 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
SNRPA1P09661 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC28.74■■■□□ 2.19
SNRPA1P09661 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SNRPA1P09661 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC28.74■■■□□ 2.19
SNRPA1P09661 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC28.74■■■□□ 2.19
SNRPA1P09661 LINC00543-201ENST00000567234 1845 ntBASIC28.74■■■□□ 2.19
SNRPA1P09661 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SNRPA1P09661 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC28.74■■■□□ 2.19
SNRPA1P09661 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SNRPA1P09661 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SNRPA1P09661 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SNRPA1P09661 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SNRPA1P09661 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SNRPA1P09661 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC28.73■■■□□ 2.19
SNRPA1P09661 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SNRPA1P09661 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC28.73■■■□□ 2.19
SNRPA1P09661 SHD-204ENST00000599689 1729 ntTSL 5 BASIC28.73■■■□□ 2.19
SNRPA1P09661 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SNRPA1P09661 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SNRPA1P09661 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC28.73■■■□□ 2.19
SNRPA1P09661 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC28.73■■■□□ 2.19
SNRPA1P09661 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SNRPA1P09661 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SNRPA1P09661 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
SNRPA1P09661 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SNRPA1P09661 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC28.72■■■□□ 2.19
SNRPA1P09661 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SNRPA1P09661 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC28.72■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms