Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TERT-206ENST00000508104 2486 ntTSL 5 BASIC24.59■■□□□ 1.53
TPM1P09493 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
TPM1P09493 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TPM1P09493 MBP-237ENST00000579129 1052 ntTSL 5 BASIC24.59■■□□□ 1.53
TPM1P09493 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
TPM1P09493 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC24.59■■□□□ 1.53
TPM1P09493 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
TPM1P09493 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.53
TPM1P09493 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
TPM1P09493 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
TPM1P09493 ABHD17AP3-201ENST00000503096 1137 ntBASIC24.58■■□□□ 1.53
TPM1P09493 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
TPM1P09493 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
TPM1P09493 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC24.58■■□□□ 1.52
TPM1P09493 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
TPM1P09493 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
TPM1P09493 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TPM1P09493 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TPM1P09493 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC24.57■■□□□ 1.52
TPM1P09493 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TPM1P09493 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
TPM1P09493 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
TPM1P09493 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC24.57■■□□□ 1.52
TPM1P09493 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
TPM1P09493 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC24.57■■□□□ 1.52
TPM1P09493 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC24.57■■□□□ 1.52
TPM1P09493 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
TPM1P09493 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TPM1P09493 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TPM1P09493 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TPM1P09493 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TPM1P09493 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC24.57■■□□□ 1.52
TPM1P09493 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
TPM1P09493 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC24.56■■□□□ 1.52
TPM1P09493 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC24.56■■□□□ 1.52
TPM1P09493 EFS-203ENST00000429593 2610 ntTSL 2 BASIC24.56■■□□□ 1.52
TPM1P09493 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TPM1P09493 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TPM1P09493 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC24.56■■□□□ 1.52
TPM1P09493 HYI-210ENST00000486909 905 ntTSL 5 BASIC24.56■■□□□ 1.52
TPM1P09493 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TPM1P09493 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TPM1P09493 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TPM1P09493 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
TPM1P09493 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
TPM1P09493 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TPM1P09493 GCA-201ENST00000233612 1694 ntTSL 2 BASIC24.56■■□□□ 1.52
TPM1P09493 ESRRAP2-201ENST00000418437 1549 ntBASIC24.56■■□□□ 1.52
TPM1P09493 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC24.55■■□□□ 1.52
TPM1P09493 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
TPM1P09493 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.55■■□□□ 1.52
TPM1P09493 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TPM1P09493 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TPM1P09493 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
TPM1P09493 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
TPM1P09493 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TPM1P09493 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
TPM1P09493 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
TPM1P09493 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
TPM1P09493 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC24.54■■□□□ 1.52
TPM1P09493 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
TPM1P09493 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TPM1P09493 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC24.54■■□□□ 1.52
TPM1P09493 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TPM1P09493 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.54■■□□□ 1.52
TPM1P09493 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
TPM1P09493 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
TPM1P09493 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
TPM1P09493 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TPM1P09493 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TPM1P09493 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
TPM1P09493 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
TPM1P09493 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TPM1P09493 COMT-203ENST00000403184 2217 ntTSL 2 BASIC24.53■■□□□ 1.52
TPM1P09493 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TPM1P09493 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC24.53■■□□□ 1.52
TPM1P09493 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
TPM1P09493 LSR-203ENST00000360798 1963 ntTSL 2 BASIC24.53■■□□□ 1.52
TPM1P09493 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
TPM1P09493 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC24.52■■□□□ 1.52
TPM1P09493 AC022616.5-201ENST00000518796 181 ntBASIC24.52■■□□□ 1.52
TPM1P09493 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC24.52■■□□□ 1.52
TPM1P09493 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC24.52■■□□□ 1.52
TPM1P09493 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
TPM1P09493 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
TPM1P09493 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
TPM1P09493 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC24.52■■□□□ 1.52
TPM1P09493 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
TPM1P09493 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
TPM1P09493 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
TPM1P09493 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC24.51■■□□□ 1.51
TPM1P09493 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
TPM1P09493 GAK-223ENST00000628912 497 ntTSL 5 BASIC24.51■■□□□ 1.51
TPM1P09493 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.51■■□□□ 1.51
TPM1P09493 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC24.51■■□□□ 1.51
TPM1P09493 AC242852.2-201ENST00000615738 1807 ntBASIC24.51■■□□□ 1.51
TPM1P09493 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
TPM1P09493 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
TPM1P09493 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC24.5■■□□□ 1.51
TPM1P09493 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms