Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MT-ND4P03905 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.42■□□□□ 0.7
MT-ND4P03905 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.42■□□□□ 0.7
MT-ND4P03905 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
MT-ND4P03905 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.42■□□□□ 0.7
MT-ND4P03905 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MT-ND4P03905 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
MT-ND4P03905 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
MT-ND4P03905 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
MT-ND4P03905 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.41■□□□□ 0.7
MT-ND4P03905 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.41■□□□□ 0.7
MT-ND4P03905 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MT-ND4P03905 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MT-ND4P03905 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MT-ND4P03905 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MT-ND4P03905 AC242852.2-201ENST00000615738 1807 ntBASIC19.41■□□□□ 0.7
MT-ND4P03905 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.41■□□□□ 0.7
MT-ND4P03905 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
MT-ND4P03905 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
MT-ND4P03905 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MT-ND4P03905 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MT-ND4P03905 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MT-ND4P03905 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MT-ND4P03905 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MT-ND4P03905 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MT-ND4P03905 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.4■□□□□ 0.7
MT-ND4P03905 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
MT-ND4P03905 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
MT-ND4P03905 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.4■□□□□ 0.7
MT-ND4P03905 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.4■□□□□ 0.7
MT-ND4P03905 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MT-ND4P03905 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MT-ND4P03905 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
MT-ND4P03905 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
MT-ND4P03905 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.4■□□□□ 0.7
MT-ND4P03905 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
MT-ND4P03905 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.39■□□□□ 0.7
MT-ND4P03905 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
MT-ND4P03905 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MT-ND4P03905 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MT-ND4P03905 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MT-ND4P03905 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
MT-ND4P03905 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.39■□□□□ 0.69
MT-ND4P03905 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MT-ND4P03905 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MT-ND4P03905 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MT-ND4P03905 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MT-ND4P03905 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MT-ND4P03905 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MT-ND4P03905 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.38■□□□□ 0.69
MT-ND4P03905 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MT-ND4P03905 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
MT-ND4P03905 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
MT-ND4P03905 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
MT-ND4P03905 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MT-ND4P03905 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.38■□□□□ 0.69
MT-ND4P03905 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MT-ND4P03905 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
MT-ND4P03905 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
MT-ND4P03905 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MT-ND4P03905 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.37■□□□□ 0.69
MT-ND4P03905 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
MT-ND4P03905 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MT-ND4P03905 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MT-ND4P03905 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.37■□□□□ 0.69
MT-ND4P03905 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
MT-ND4P03905 AL592295.1-201ENST00000400984 884 ntBASIC19.37■□□□□ 0.69
MT-ND4P03905 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.37■□□□□ 0.69
MT-ND4P03905 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.37■□□□□ 0.69
MT-ND4P03905 AC129492.7-201ENST00000622992 756 ntBASIC19.37■□□□□ 0.69
MT-ND4P03905 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MT-ND4P03905 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MT-ND4P03905 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.37■□□□□ 0.69
MT-ND4P03905 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MT-ND4P03905 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MT-ND4P03905 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MT-ND4P03905 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MT-ND4P03905 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MT-ND4P03905 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
MT-ND4P03905 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.36■□□□□ 0.69
MT-ND4P03905 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.36■□□□□ 0.69
MT-ND4P03905 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MT-ND4P03905 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
MT-ND4P03905 AC090877.2-201ENST00000558441 1738 ntBASIC19.36■□□□□ 0.69
MT-ND4P03905 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
MT-ND4P03905 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
MT-ND4P03905 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.35■□□□□ 0.69
MT-ND4P03905 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MT-ND4P03905 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.35■□□□□ 0.69
MT-ND4P03905 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
MT-ND4P03905 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
MT-ND4P03905 KRT18P60-201ENST00000312876 1297 ntBASIC19.35■□□□□ 0.69
MT-ND4P03905 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.35■□□□□ 0.69
MT-ND4P03905 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MT-ND4P03905 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
MT-ND4P03905 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.34■□□□□ 0.69
MT-ND4P03905 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
MT-ND4P03905 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.34■□□□□ 0.69
MT-ND4P03905 LONRF2P2-201ENST00000439212 571 ntBASIC19.34■□□□□ 0.69
MT-ND4P03905 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms