Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC34.26■■■■□ 3.08
RAPGEF3O95398 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC34.26■■■■□ 3.08
RAPGEF3O95398 WWOX-218ENST00000627394 894 ntTSL 5 BASIC34.26■■■■□ 3.08
RAPGEF3O95398 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC34.26■■■■□ 3.07
RAPGEF3O95398 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC34.26■■■■□ 3.07
RAPGEF3O95398 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC34.26■■■■□ 3.07
RAPGEF3O95398 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
RAPGEF3O95398 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
RAPGEF3O95398 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC34.25■■■■□ 3.07
RAPGEF3O95398 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC34.25■■■■□ 3.07
RAPGEF3O95398 AC004854.2-201ENST00000608450 1441 ntBASIC34.25■■■■□ 3.07
RAPGEF3O95398 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC34.25■■■■□ 3.07
RAPGEF3O95398 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC34.25■■■■□ 3.07
RAPGEF3O95398 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC34.25■■■■□ 3.07
RAPGEF3O95398 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC34.25■■■■□ 3.07
RAPGEF3O95398 AL499627.2-201ENST00000606283 725 ntBASIC34.25■■■■□ 3.07
RAPGEF3O95398 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC34.25■■■■□ 3.07
RAPGEF3O95398 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC34.25■■■■□ 3.07
RAPGEF3O95398 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC34.25■■■■□ 3.07
RAPGEF3O95398 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC34.25■■■■□ 3.07
RAPGEF3O95398 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
RAPGEF3O95398 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC34.24■■■■□ 3.07
RAPGEF3O95398 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
RAPGEF3O95398 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC34.24■■■■□ 3.07
RAPGEF3O95398 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
RAPGEF3O95398 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
RAPGEF3O95398 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
RAPGEF3O95398 SHD-204ENST00000599689 1729 ntTSL 5 BASIC34.24■■■■□ 3.07
RAPGEF3O95398 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
RAPGEF3O95398 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC34.23■■■■□ 3.07
RAPGEF3O95398 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
RAPGEF3O95398 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC34.23■■■■□ 3.07
RAPGEF3O95398 GAMT-205ENST00000640762 751 ntTSL 5 BASIC34.23■■■■□ 3.07
RAPGEF3O95398 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC34.22■■■■□ 3.07
RAPGEF3O95398 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
RAPGEF3O95398 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
RAPGEF3O95398 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
RAPGEF3O95398 APTR-205ENST00000447009 902 ntTSL 2 BASIC34.22■■■■□ 3.07
RAPGEF3O95398 OR2I1P-207ENST00000453522 948 ntBASIC34.22■■■■□ 3.07
RAPGEF3O95398 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC34.22■■■■□ 3.07
RAPGEF3O95398 MIR6089-201ENST00000616698 64 ntBASIC34.22■■■■□ 3.07
RAPGEF3O95398 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC34.22■■■■□ 3.07
RAPGEF3O95398 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC34.22■■■■□ 3.07
RAPGEF3O95398 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
RAPGEF3O95398 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC34.21■■■■□ 3.07
RAPGEF3O95398 MIR663A-201ENST00000385250 93 ntBASIC34.21■■■■□ 3.07
RAPGEF3O95398 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC34.21■■■■□ 3.07
RAPGEF3O95398 TPRG1LP1-201ENST00000598702 760 ntBASIC34.21■■■■□ 3.07
RAPGEF3O95398 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC34.21■■■■□ 3.07
RAPGEF3O95398 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC34.2■■■■□ 3.07
RAPGEF3O95398 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC34.2■■■■□ 3.07
RAPGEF3O95398 COX20-201ENST00000366528 568 ntTSL 2 BASIC34.2■■■■□ 3.07
RAPGEF3O95398 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC34.2■■■■□ 3.07
RAPGEF3O95398 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC34.2■■■■□ 3.07
RAPGEF3O95398 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC34.2■■■■□ 3.07
RAPGEF3O95398 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC34.2■■■■□ 3.06
RAPGEF3O95398 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC34.2■■■■□ 3.06
RAPGEF3O95398 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC34.19■■■■□ 3.06
RAPGEF3O95398 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC34.19■■■■□ 3.06
RAPGEF3O95398 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC34.19■■■■□ 3.06
RAPGEF3O95398 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC34.18■■■■□ 3.06
RAPGEF3O95398 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
RAPGEF3O95398 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC34.18■■■■□ 3.06
RAPGEF3O95398 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
RAPGEF3O95398 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC34.18■■■■□ 3.06
RAPGEF3O95398 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC34.18■■■■□ 3.06
RAPGEF3O95398 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC34.17■■■■□ 3.06
RAPGEF3O95398 GPX1P1-201ENST00000388829 606 ntBASIC34.17■■■■□ 3.06
RAPGEF3O95398 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC34.17■■■■□ 3.06
RAPGEF3O95398 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC34.17■■■■□ 3.06
RAPGEF3O95398 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC34.17■■■■□ 3.06
RAPGEF3O95398 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC34.16■■■■□ 3.06
RAPGEF3O95398 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC34.16■■■■□ 3.06
RAPGEF3O95398 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
RAPGEF3O95398 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC34.16■■■■□ 3.06
RAPGEF3O95398 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
RAPGEF3O95398 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC34.16■■■■□ 3.06
RAPGEF3O95398 AC142086.2-201ENST00000569753 217 ntBASIC34.16■■■■□ 3.06
RAPGEF3O95398 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC34.16■■■■□ 3.06
RAPGEF3O95398 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC34.16■■■■□ 3.06
RAPGEF3O95398 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC34.15■■■■□ 3.06
RAPGEF3O95398 CD37-213ENST00000598095 1598 ntTSL 2 BASIC34.15■■■■□ 3.06
RAPGEF3O95398 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC34.15■■■■□ 3.06
RAPGEF3O95398 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
RAPGEF3O95398 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC34.14■■■■□ 3.06
RAPGEF3O95398 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC34.14■■■■□ 3.06
RAPGEF3O95398 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC34.14■■■■□ 3.06
RAPGEF3O95398 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
RAPGEF3O95398 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC34.13■■■■□ 3.05
RAPGEF3O95398 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
RAPGEF3O95398 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC34.13■■■■□ 3.05
RAPGEF3O95398 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC34.12■■■■□ 3.05
RAPGEF3O95398 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
RAPGEF3O95398 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC34.12■■■■□ 3.05
RAPGEF3O95398 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC34.12■■■■□ 3.05
RAPGEF3O95398 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC34.12■■■■□ 3.05
RAPGEF3O95398 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
RAPGEF3O95398 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
RAPGEF3O95398 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
RAPGEF3O95398 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC34.11■■■■□ 3.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms