Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SDC3O75056 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.97■■□□□ 1.11
SDC3O75056 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SDC3O75056 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.97■■□□□ 1.11
SDC3O75056 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.97■■□□□ 1.11
SDC3O75056 MIR6084-201ENST00000622012 110 ntBASIC21.97■■□□□ 1.11
SDC3O75056 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
SDC3O75056 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SDC3O75056 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
SDC3O75056 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.97■■□□□ 1.11
SDC3O75056 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.96■■□□□ 1.11
SDC3O75056 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
SDC3O75056 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SDC3O75056 AC138932.3-201ENST00000567634 1902 ntBASIC21.96■■□□□ 1.11
SDC3O75056 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SDC3O75056 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SDC3O75056 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SDC3O75056 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SDC3O75056 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SDC3O75056 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SDC3O75056 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.95■■□□□ 1.11
SDC3O75056 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SDC3O75056 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
SDC3O75056 AC034268.1-201ENST00000441047 882 ntBASIC21.95■■□□□ 1.1
SDC3O75056 YBX1P1-201ENST00000445822 960 ntBASIC21.95■■□□□ 1.1
SDC3O75056 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.95■■□□□ 1.1
SDC3O75056 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.95■■□□□ 1.1
SDC3O75056 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.95■■□□□ 1.1
SDC3O75056 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SDC3O75056 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SDC3O75056 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
SDC3O75056 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.94■■□□□ 1.1
SDC3O75056 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SDC3O75056 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.94■■□□□ 1.1
SDC3O75056 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.94■■□□□ 1.1
SDC3O75056 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SDC3O75056 IGHV3-19-201ENST00000521488 291 ntBASIC21.94■■□□□ 1.1
SDC3O75056 AC010525.1-201ENST00000585559 441 ntBASIC21.94■■□□□ 1.1
SDC3O75056 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SDC3O75056 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.94■■□□□ 1.1
SDC3O75056 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SDC3O75056 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SDC3O75056 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
SDC3O75056 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SDC3O75056 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SDC3O75056 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.93■■□□□ 1.1
SDC3O75056 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.93■■□□□ 1.1
SDC3O75056 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SDC3O75056 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SDC3O75056 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SDC3O75056 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.93■■□□□ 1.1
SDC3O75056 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.93■■□□□ 1.1
SDC3O75056 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.93■■□□□ 1.1
SDC3O75056 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.93■■□□□ 1.1
SDC3O75056 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SDC3O75056 IKBKGP1-201ENST00000612193 1073 ntBASIC21.93■■□□□ 1.1
SDC3O75056 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SDC3O75056 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SDC3O75056 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.92■■□□□ 1.1
SDC3O75056 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SDC3O75056 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SDC3O75056 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SDC3O75056 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.92■■□□□ 1.1
SDC3O75056 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
SDC3O75056 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.91■■□□□ 1.1
SDC3O75056 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.91■■□□□ 1.1
SDC3O75056 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.91■■□□□ 1.1
SDC3O75056 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.91■■□□□ 1.1
SDC3O75056 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SDC3O75056 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
SDC3O75056 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SDC3O75056 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.91■■□□□ 1.1
SDC3O75056 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
SDC3O75056 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SDC3O75056 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.91■■□□□ 1.1
SDC3O75056 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SDC3O75056 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SDC3O75056 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.9■■□□□ 1.1
SDC3O75056 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.9■■□□□ 1.1
SDC3O75056 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SDC3O75056 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SDC3O75056 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
SDC3O75056 KRT18P5-201ENST00000436075 1291 ntBASIC21.9■■□□□ 1.1
SDC3O75056 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.9■■□□□ 1.1
SDC3O75056 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.9■■□□□ 1.1
SDC3O75056 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SDC3O75056 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SDC3O75056 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SDC3O75056 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SDC3O75056 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SDC3O75056 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.89■■□□□ 1.09
SDC3O75056 DUX4L2-201ENST00000561772 1275 ntBASIC21.89■■□□□ 1.09
SDC3O75056 AC022517.1-201ENST00000592429 346 ntBASIC21.89■■□□□ 1.09
SDC3O75056 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.89■■□□□ 1.09
SDC3O75056 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.89■■□□□ 1.09
SDC3O75056 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SDC3O75056 AL358852.1-201ENST00000623174 1268 ntBASIC21.89■■□□□ 1.09
SDC3O75056 DUX4L6-201ENST00000626483 1275 ntBASIC21.89■■□□□ 1.09
SDC3O75056 DUX4L1-201ENST00000627662 1275 ntBASIC21.89■■□□□ 1.09
SDC3O75056 DUX4L8-201ENST00000629013 1275 ntBASIC21.89■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms