Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PRKNO60260 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PRKNO60260 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
PRKNO60260 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.85■□□□□ 0.93
PRKNO60260 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
PRKNO60260 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PRKNO60260 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PRKNO60260 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PRKNO60260 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PRKNO60260 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PRKNO60260 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PRKNO60260 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PRKNO60260 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PRKNO60260 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PRKNO60260 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.84■□□□□ 0.93
PRKNO60260 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.84■□□□□ 0.93
PRKNO60260 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PRKNO60260 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PRKNO60260 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PRKNO60260 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.84■□□□□ 0.93
PRKNO60260 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.84■□□□□ 0.93
PRKNO60260 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
PRKNO60260 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PRKNO60260 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PRKNO60260 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PRKNO60260 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
PRKNO60260 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
PRKNO60260 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
PRKNO60260 MIR638-201ENST00000385237 100 ntBASIC20.83■□□□□ 0.93
PRKNO60260 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PRKNO60260 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.83■□□□□ 0.93
PRKNO60260 AC079630.1-202ENST00000618127 1840 ntBASIC20.83■□□□□ 0.92
PRKNO60260 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PRKNO60260 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PRKNO60260 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PRKNO60260 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
PRKNO60260 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PRKNO60260 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
PRKNO60260 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
PRKNO60260 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.82■□□□□ 0.92
PRKNO60260 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PRKNO60260 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.82■□□□□ 0.92
PRKNO60260 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PRKNO60260 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PRKNO60260 AL136162.1-201ENST00000607711 1078 ntBASIC20.82■□□□□ 0.92
PRKNO60260 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PRKNO60260 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PRKNO60260 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
PRKNO60260 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.82■□□□□ 0.92
PRKNO60260 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.81■□□□□ 0.92
PRKNO60260 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PRKNO60260 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PRKNO60260 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.81■□□□□ 0.92
PRKNO60260 SERBP1P1-201ENST00000396021 1160 ntBASIC20.81■□□□□ 0.92
PRKNO60260 PBX2P1-201ENST00000493219 1291 ntBASIC20.81■□□□□ 0.92
PRKNO60260 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PRKNO60260 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.81■□□□□ 0.92
PRKNO60260 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PRKNO60260 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PRKNO60260 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PRKNO60260 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PRKNO60260 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.81■□□□□ 0.92
PRKNO60260 ANOS2P-203ENST00000472227 1816 ntBASIC20.81■□□□□ 0.92
PRKNO60260 SYT6-210ENST00000641643 1587 ntBASIC20.8■□□□□ 0.92
PRKNO60260 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRKNO60260 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRKNO60260 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRKNO60260 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRKNO60260 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRKNO60260 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRKNO60260 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.8■□□□□ 0.92
PRKNO60260 AC024257.2-201ENST00000549699 147 ntBASIC20.8■□□□□ 0.92
PRKNO60260 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.8■□□□□ 0.92
PRKNO60260 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PRKNO60260 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRKNO60260 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.79■□□□□ 0.92
PRKNO60260 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.79■□□□□ 0.92
PRKNO60260 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PRKNO60260 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRKNO60260 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRKNO60260 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRKNO60260 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PRKNO60260 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRKNO60260 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.79■□□□□ 0.92
PRKNO60260 AC106739.1-201ENST00000617035 715 ntBASIC20.79■□□□□ 0.92
PRKNO60260 AC009086.3-201ENST00000623486 1008 ntBASIC20.79■□□□□ 0.92
PRKNO60260 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PRKNO60260 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRKNO60260 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.78■□□□□ 0.92
PRKNO60260 AC241377.3-202ENST00000626088 1088 ntBASIC20.78■□□□□ 0.92
PRKNO60260 AC241585.3-202ENST00000628937 1088 ntBASIC20.78■□□□□ 0.92
PRKNO60260 AC245100.8-202ENST00000629247 1058 ntBASIC20.78■□□□□ 0.92
PRKNO60260 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PRKNO60260 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRKNO60260 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRKNO60260 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRKNO60260 AC135279.3-201ENST00000610945 1311 ntBASIC20.78■□□□□ 0.92
PRKNO60260 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRKNO60260 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRKNO60260 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms