Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 SPC25YER018C 666 nt12.15□□□□□ -0.46
SHP1P34223 ATF2YGR177C 1608 nt12.15□□□□□ -0.47
SHP1P34223 CCT4YDL143W 1587 nt12.14□□□□□ -0.47
SHP1P34223 YLR415CYLR415C 339 nt12.14□□□□□ -0.47
SHP1P34223 BDF1YLR399C 2061 nt12.12□□□□□ -0.47
SHP1P34223 NAT4YMR069W 858 nt12.11□□□□□ -0.47
SHP1P34223 YDR524C-BYDR524C-B 201 nt12.1□□□□□ -0.47
SHP1P34223 VPS60YDR486C 690 nt12.07□□□□□ -0.48
SHP1P34223 GPI16YHR188C 1833 nt12.06□□□□□ -0.48
SHP1P34223 ALG3YBL082C 1377 nt12.05□□□□□ -0.48
SHP1P34223 MIR1YJR077C 936 nt12.05□□□□□ -0.48
SHP1P34223 DDR2YOL052C-A 186 nt12.05□□□□□ -0.48
SHP1P34223 ERF2YLR246W 1080 nt12.04□□□□□ -0.48
SHP1P34223 YFL067WYFL067W 528 nt12.03□□□□□ -0.48
SHP1P34223 CRR1YLR213C 1269 nt12.03□□□□□ -0.48
SHP1P34223 MSF1YPR047W 1410 nt12.03□□□□□ -0.48
SHP1P34223 NCP1YHR042W 2076 nt12.02□□□□□ -0.48
SHP1P34223 GLK1YCL040W 1503 nt12.02□□□□□ -0.48
SHP1P34223 YDL086C-AYDL086C-A 435 nt12.02□□□□□ -0.49
SHP1P34223 SWC5YBR231C 912 nt12.02□□□□□ -0.49
SHP1P34223 SEC11YIR022W 504 nt12.01□□□□□ -0.49
SHP1P34223 ANP1YEL036C 1503 nt12□□□□□ -0.49
SHP1P34223 THI74YDR438W 1113 nt11.99□□□□□ -0.49
SHP1P34223 FEN2YCR028C 1539 nt11.99□□□□□ -0.49
SHP1P34223 VPS75YNL246W 795 nt11.98□□□□□ -0.49
SHP1P34223 LYS4YDR234W 2082 nt11.96□□□□□ -0.49
SHP1P34223 TAT1YBR069C 1860 nt11.96□□□□□ -0.49
SHP1P34223 SPT8YLR055C 1809 nt11.95□□□□□ -0.5
SHP1P34223 SNG1YGR197C 1644 nt11.95□□□□□ -0.5
SHP1P34223 MIC10YCL057C-A 294 nt11.93□□□□□ -0.5
SHP1P34223 PCH2YBR186W 1695 nt11.93□□□□□ -0.5
SHP1P34223 HEM12YDR047W 1089 nt11.88□□□□□ -0.51
SHP1P34223 YIR016WYIR016W 798 nt11.87□□□□□ -0.51
SHP1P34223 DAT1YML113W 747 nt11.87□□□□□ -0.51
SHP1P34223 YMR244WYMR244W 1068 nt11.86□□□□□ -0.51
SHP1P34223 GUT2YIL155C 1950 nt11.86□□□□□ -0.51
SHP1P34223 PIB2YGL023C 1908 nt11.8□□□□□ -0.52
SHP1P34223 YGL034CYGL034C 366 nt11.78□□□□□ -0.52
SHP1P34223 TIM17YJL143W 477 nt11.77□□□□□ -0.53
SHP1P34223 UBA4YHR111W 1323 nt11.77□□□□□ -0.53
SHP1P34223 SHB17YKR043C 816 nt11.76□□□□□ -0.53
SHP1P34223 PAU7YAR020C 168 nt11.75□□□□□ -0.53
SHP1P34223 SHM2YLR058C 1410 nt11.75□□□□□ -0.53
SHP1P34223 BOP3YNL042W 1191 nt11.74□□□□□ -0.53
SHP1P34223 RTF1YGL244W 1677 nt11.73□□□□□ -0.53
SHP1P34223 GLR1YPL091W 1452 nt11.72□□□□□ -0.53
SHP1P34223 YDR010CYDR010C 333 nt11.71□□□□□ -0.53
SHP1P34223 XDJ1YLR090W 1380 nt11.69□□□□□ -0.54
SHP1P34223 NIT1YIL164C 600 nt11.69□□□□□ -0.54
SHP1P34223 YSR3YKR053C 1215 nt11.67□□□□□ -0.54
SHP1P34223 SGT2YOR007C 1041 nt11.67□□□□□ -0.54
SHP1P34223 YHR056W-AYHR056W-A 435 nt11.66□□□□□ -0.54
SHP1P34223 XYL2YLR070C 1071 nt11.66□□□□□ -0.54
SHP1P34223 MIC12YBR262C 321 nt11.66□□□□□ -0.54
SHP1P34223 NDI1YML120C 1542 nt11.62□□□□□ -0.55
SHP1P34223 PTK1YKL198C 1989 nt11.61□□□□□ -0.55
SHP1P34223 RBG2YGR173W 1107 nt11.61□□□□□ -0.55
SHP1P34223 RBG1YAL036C 1110 nt11.6□□□□□ -0.55
SHP1P34223 BNA2YJR078W 1362 nt11.59□□□□□ -0.55
SHP1P34223 GDH3YAL062W 1374 nt11.58□□□□□ -0.56
SHP1P34223 RET2YFR051C 1641 nt11.58□□□□□ -0.56
SHP1P34223 PHO89YBR296C 1725 nt11.55□□□□□ -0.56
SHP1P34223 RAX1YOR301W 1308 nt11.53□□□□□ -0.56
SHP1P34223 YGR201CYGR201C 678 nt11.5□□□□□ -0.57
SHP1P34223 AIM45YPR004C 1035 nt11.5□□□□□ -0.57
SHP1P34223 HHO1YPL127C 777 nt11.49□□□□□ -0.57
SHP1P34223 YCR087WYCR087W 516 nt11.48□□□□□ -0.57
SHP1P34223 Q0182Q0182 405 nt11.47□□□□□ -0.57
SHP1P34223 COQ2YNR041C 1119 nt11.44□□□□□ -0.58
SHP1P34223 AVT6YER119C 1347 nt11.43□□□□□ -0.58
SHP1P34223 SFA1YDL168W 1161 nt11.41□□□□□ -0.58
SHP1P34223 DUT1YBR252W 444 nt11.41□□□□□ -0.58
SHP1P34223 AGP1YCL025C 1902 nt11.41□□□□□ -0.58
SHP1P34223 YFL054CYFL054C 1941 nt11.38□□□□□ -0.59
SHP1P34223 YMR226CYMR226C 804 nt11.37□□□□□ -0.59
SHP1P34223 MRP20YDR405W 792 nt11.36□□□□□ -0.59
SHP1P34223 PAC11YDR488C 1602 nt11.35□□□□□ -0.59
SHP1P34223 YCR102CYCR102C 1107 nt11.32□□□□□ -0.6
SHP1P34223 GOR1YNL274C 1053 nt11.32□□□□□ -0.6
SHP1P34223 CCA1YER168C 1641 nt11.31□□□□□ -0.6
SHP1P34223 SAM1YLR180W 1149 nt11.3□□□□□ -0.6
SHP1P34223 YHL019W-AYHL019W-A 594 nt11.29□□□□□ -0.6
SHP1P34223 SHH4YLR164W 507 nt11.28□□□□□ -0.6
SHP1P34223 RPL4BYDR012W 1089 nt11.23□□□□□ -0.61
SHP1P34223 RPL4AYBR031W 1089 nt11.23□□□□□ -0.61
SHP1P34223 NBP35YGL091C 987 nt11.22□□□□□ -0.61
SHP1P34223 RPS14BYJL191W 417 nt11.22□□□□□ -0.61
SHP1P34223 YLR111WYLR111W 333 nt11.22□□□□□ -0.61
SHP1P34223 CAB5YDR196C 726 nt11.21□□□□□ -0.61
SHP1P34223 RAD51YER095W 1203 nt11.21□□□□□ -0.61
SHP1P34223 NVJ2YPR091C 2313 nt11.2□□□□□ -0.62
SHP1P34223 SWE1YJL187C 2460 nt11.19□□□□□ -0.62
SHP1P34223 TIR3YIL011W 810 nt11.17□□□□□ -0.62
SHP1P34223 YLR437C-AYLR437C-A 228 nt11.16□□□□□ -0.62
SHP1P34223 TOM6YOR045W 186 nt11.15□□□□□ -0.62
SHP1P34223 SDH5YOL071W 489 nt11.14□□□□□ -0.63
SHP1P34223 HIP1YGR191W 1812 nt11.13□□□□□ -0.63
SHP1P34223 RAD23YEL037C 1197 nt11.12□□□□□ -0.63
SHP1P34223 CLB6YGR109C 1143 nt11.12□□□□□ -0.63
SHP1P34223 POM34YLR018C 900 nt11.11□□□□□ -0.63
Retrieved 100 of 7,029 protein–RNA pairs in 12.5 ms