Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RAD51D-202ENST00000345365 9988 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.553e-11■■■■■ 36.5
YBX3P16989 LINC01029-203ENST00000582805 788 ntTSL 1 (best)20.1■□□□□ 0.819e-8■■■■■ 36.5
YBX3P16989 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC25.89■■□□□ 1.732e-7■■■■■ 36.5
YBX3P16989 C22orf34-202ENST00000400023 1469 ntTSL 1 (best)20.23■□□□□ 0.832e-7■■■■■ 36.5
YBX3P16989 PHC2-210ENST00000485928 2548 ntTSL 223.24■■□□□ 1.319e-7■■■■■ 36.4
YBX3P16989 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.269e-7■■■■■ 36.4
YBX3P16989 PHC2-203ENST00000373422 2799 ntTSL 2 BASIC13.27□□□□□ -0.289e-7■■■■■ 36.4
YBX3P16989 PHC2-201ENST00000257118 3870 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.439e-7■■■■■ 36.4
YBX3P16989 PHC2-204ENST00000431992 3789 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.619e-7■■■■■ 36.4
YBX3P16989 HACD3-207ENST00000566074 1658 ntTSL 5 BASIC15.4■□□□□ 0.061e-7■■■■■ 36.2
YBX3P16989 TNS1-215ENST00000480416 335 ntTSL 25.11□□□□□ -1.591e-11■■■■■ 36.1
YBX3P16989 MGRN1-214ENST00000591673 568 ntTSL 417.6■□□□□ 0.415e-9■■■■■ 36.1
YBX3P16989 RPL31-211ENST00000456292 357 ntTSL 26.42□□□□□ -1.382e-9■■■■■ 35.9
YBX3P16989 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.023e-9■■■■■ 35.9
YBX3P16989 CIAO1-201ENST00000272402 3588 ntTSL 212.73□□□□□ -0.373e-9■■■■■ 35.9
YBX3P16989 MARCH7-204ENST00000420397 983 ntTSL 58.55□□□□□ -1.041e-11■■■■■ 35.6
YBX3P16989 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.193e-7■■■■■ 35.3
YBX3P16989 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.482e-11■■■■■ 35.1
YBX3P16989 IKZF4-201ENST00000262032 5229 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.462e-11■■■■■ 35.1
YBX3P16989 IKZF4-202ENST00000431367 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.582e-11■■■■■ 35.1
YBX3P16989 IKZF4-210ENST00000551103 3683 ntTSL 210.13□□□□□ -0.792e-11■■■■■ 35.1
YBX3P16989 IKZF4-211ENST00000551124 4396 ntTSL 1 (best)9.96□□□□□ -0.822e-11■■■■■ 35.1
YBX3P16989 THAP12-204ENST00000529901 6795 ntTSL 1 (best)5.15□□□□□ -1.592e-11■■■■■ 35.1
YBX3P16989 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.7□□□□□ -1.51e-7■■■■■ 35.1
YBX3P16989 DOPEY2-202ENST00000399151 7685 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.775e-12■■■■■ 35
YBX3P16989 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.92■■□□□ 1.742e-7■■■■■ 35
YBX3P16989 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC20.53■□□□□ 0.882e-7■■■■■ 35
YBX3P16989 HACD3-210ENST00000568793 1824 ntTSL 5 BASIC14.92□□□□□ -0.021e-7■■■■■ 34.9
YBX3P16989 HDLBP-210ENST00000423693 544 ntTSL 516.39■□□□□ 0.213e-12■■■■■ 34.7
YBX3P16989 HDLBP-205ENST00000413241 581 ntTSL 513.79□□□□□ -0.23e-12■■■■■ 34.7
YBX3P16989 ABCC1-206ENST00000574761 996 ntTSL 216.31■□□□□ 0.21e-8■■■■■ 34.3
YBX3P16989 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.011e-7■■■■■ 34.3
YBX3P16989 GPT2-202ENST00000440783 4228 ntTSL 2 BASIC12.66□□□□□ -0.381e-7■■■■■ 34.3
YBX3P16989 HACD3-201ENST00000261875 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.121e-7■■■■■ 34.2
YBX3P16989 MRPL21-203ENST00000536637 557 ntTSL 216.29■□□□□ 0.24e-8■■■■■ 34
YBX3P16989 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.633e-13■■■■■ 34
YBX3P16989 MED30-203ENST00000519879 545 ntTSL 214.04□□□□□ -0.163e-13■■■■■ 34
YBX3P16989 BRD7-201ENST00000394688 5370 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.668e-7■■■■■ 33.9
YBX3P16989 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC8.15□□□□□ -1.118e-7■■■■■ 33.9
YBX3P16989 RAB3GAP2-201ENST00000237724 821 ntTSL 321.99■■□□□ 1.113e-8■■■■■ 33.8
YBX3P16989 RAB3GAP2-204ENST00000474178 539 ntTSL 414.57□□□□□ -0.083e-8■■■■■ 33.8
YBX3P16989 ZNF212-202ENST00000462724 860 ntTSL 532.01■■■□□ 2.718e-10■■■■■ 33.7
YBX3P16989 ZNF212-204ENST00000486371 637 ntTSL 329.45■■■□□ 2.318e-10■■■■■ 33.7
YBX3P16989 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.088e-10■■■■■ 33.7
YBX3P16989 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC7.51□□□□□ -1.212e-7■■■■■ 33.6
YBX3P16989 C22orf34-205ENST00000416411 542 ntTSL 417.44■□□□□ 0.383e-7■■■■■ 33.6
YBX3P16989 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.57□□□□□ -0.083e-7■■■■■ 33.6
YBX3P16989 FUCA2-203ENST00000451668 737 ntTSL 210.09□□□□□ -0.799e-12■■■■■ 33.5
YBX3P16989 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.159e-10■■■■■ 33.5
YBX3P16989 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC13.82□□□□□ -0.29e-10■■■■■ 33.5
YBX3P16989 MCFD2-207ENST00000409913 3975 ntTSL 1 (best) BASIC11.21□□□□□ -0.619e-10■■■■■ 33.5
YBX3P16989 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.289e-10■■■■■ 33.5
YBX3P16989 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.66□□□□□ -1.349e-10■■■■■ 33.5
YBX3P16989 TNS1-217ENST00000490566 1652 ntTSL 211.35□□□□□ -0.594e-7■■■■■ 33.4
YBX3P16989 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.12■■□□□ 1.135e-7■■■■■ 33.3
YBX3P16989 ADARB1-203ENST00000389861 5031 ntTSL 1 (best)22.12■■□□□ 1.135e-7■■■■■ 33.3
YBX3P16989 ADARB1-212ENST00000496664 5033 ntTSL 1 (best)22.12■■□□□ 1.135e-7■■■■■ 33.3
YBX3P16989 ADARB1-211ENST00000492414 4913 ntTSL 1 (best)21.17■□□□□ 0.985e-7■■■■■ 33.3
YBX3P16989 ADARB1-206ENST00000449478 704 ntTSL 520.71■□□□□ 0.915e-7■■■■■ 33.3
YBX3P16989 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.595e-7■■■■■ 33.3
YBX3P16989 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.26■□□□□ 0.515e-7■■■■■ 33.3
YBX3P16989 ADARB1-214ENST00000629643 4583 ntTSL 5 BASIC13.26□□□□□ -0.295e-7■■■■■ 33.3
YBX3P16989 ADARB1-209ENST00000464215 389 ntTSL 39.64□□□□□ -0.875e-7■■■■■ 33.3
YBX3P16989 SAP30BP-224ENST00000584557 2000 nt22.53■■□□□ 1.22e-7■■■■■ 33.2
YBX3P16989 SAP30BP-207ENST00000578756 652 ntTSL 218.07■□□□□ 0.482e-7■■■■■ 33.2
YBX3P16989 SAP30BP-209ENST00000579005 462 ntTSL 318.07■□□□□ 0.482e-7■■■■■ 33.2
YBX3P16989 RPL31-209ENST00000419276 781 ntTSL 56.42□□□□□ -1.382e-8■■■■■ 33.2
YBX3P16989 AC012618.2-201ENST00000428058 849 ntBASIC26.37■■□□□ 1.811e-8■■■■■ 33.1
YBX3P16989 MARCH6-214ENST00000606497 1334 ntTSL 49.22□□□□□ -0.936e-14■■■■■ 33.1
YBX3P16989 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC22.41■■□□□ 1.182e-7■■■■■ 33
YBX3P16989 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.932e-7■■■■■ 33
YBX3P16989 KLHL20-201ENST00000209884 3421 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.611e-10■■■■■ 32.9
YBX3P16989 CPNE7-203ENST00000525982 576 ntTSL 528.75■■■□□ 2.192e-7■■■■■ 32.9
YBX3P16989 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.092e-7■■■■■ 32.9
YBX3P16989 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.81■□□□□ 0.762e-7■■■■■ 32.9
YBX3P16989 ANXA2-220ENST00000559370 521 ntTSL 411.43□□□□□ -0.581e-16■■■■■ 32.9
YBX3P16989 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.64■■□□□ 1.066e-9■■■■■ 32.8
YBX3P16989 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.936e-9■■■■■ 32.8
YBX3P16989 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.96e-9■■■■■ 32.8
YBX3P16989 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.866e-9■■■■■ 32.8
YBX3P16989 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.2■□□□□ 0.826e-9■■■■■ 32.8
YBX3P16989 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.696e-9■■■■■ 32.8
YBX3P16989 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.666e-9■■■■■ 32.8
YBX3P16989 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.156e-9■■■■■ 32.8
YBX3P16989 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC19.51■□□□□ 0.711e-6■■■■■ 32.7
YBX3P16989 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC19.51■□□□□ 0.711e-6■■■■■ 32.7
YBX3P16989 MEF2C-207ENST00000503554 1345 ntTSL 5 BASIC16.08■□□□□ 0.161e-6■■■■■ 32.7
YBX3P16989 MEF2C-230ENST00000627717 815 ntTSL 513.6□□□□□ -0.231e-6■■■■■ 32.7
YBX3P16989 MEF2C-213ENST00000508569 1882 ntTSL 5 BASIC13.29□□□□□ -0.281e-6■■■■■ 32.7
YBX3P16989 MEF2C-228ENST00000627170 722 ntTSL 512.81□□□□□ -0.361e-6■■■■■ 32.7
YBX3P16989 MEF2C-203ENST00000437473 4340 ntTSL 1 (best) BASIC11.51□□□□□ -0.571e-6■■■■■ 32.7
YBX3P16989 MEF2C-238ENST00000636143 2247 ntTSL 510.92□□□□□ -0.661e-6■■■■■ 32.7
YBX3P16989 MEF2C-221ENST00000514015 2772 ntTSL 5 BASIC10.63□□□□□ -0.711e-6■■■■■ 32.7
YBX3P16989 MEF2C-239ENST00000636294 2576 ntTSL 5 BASIC10.17□□□□□ -0.781e-6■■■■■ 32.7
YBX3P16989 MEF2C-209ENST00000504921 7561 ntTSL 1 (best) BASIC10.03□□□□□ -0.81e-6■■■■■ 32.7
YBX3P16989 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC9.83□□□□□ -0.841e-6■■■■■ 32.7
YBX3P16989 MEF2C-229ENST00000627659 2393 ntTSL 5 BASIC9.18□□□□□ -0.941e-6■■■■■ 32.7
YBX3P16989 MEF2C-222ENST00000514028 3393 ntTSL 5 BASIC8.67□□□□□ -1.021e-6■■■■■ 32.7
YBX3P16989 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC8.51□□□□□ -1.051e-6■■■■■ 32.7
YBX3P16989 MEF2C-218ENST00000510980 527 ntTSL 28.48□□□□□ -1.051e-6■■■■■ 32.7
Retrieved 100 of 29,075 protein–RNA pairs in 82.9 ms