Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 RYR1-202ENST00000359596 15117 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 SEMA6A-202ENST00000343348 6878 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 GNG4-204ENST00000450593 4978 ntAPPRIS P1 TSL 4 BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 ARF3-201ENST00000256682 4105 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 MYRIP-203ENST00000425621 2981 ntTSL 2 BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 SHROOM3-201ENST00000296043 11020 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC11.77□□□□□ -0.52
KCNIP3Q9Y2W7 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 COX18-201ENST00000295890 6846 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 CEP68-201ENST00000260569 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 NSL1-201ENST00000366976 722 ntTSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 AL162726.2-201ENST00000438986 1017 ntBASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 CICP12-201ENST00000455801 843 ntBASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 AC123567.1-201ENST00000548294 1261 ntBASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 DRG2-220ENST00000583355 891 ntTSL 3 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 AC145423.3-201ENST00000615987 467 ntBASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 AC244453.2-201ENST00000457996 3543 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 NBN-203ENST00000409330 4523 ntTSL 5 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 FAM225B-201ENST00000423546 5629 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 SLC35B4-201ENST00000378509 6797 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 IP6K1-202ENST00000395238 4117 ntTSL 3 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 PI4KAP2-201ENST00000360806 2080 ntBASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 USE1-206ENST00000595101 1776 ntTSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
KCNIP3Q9Y2W7 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 LRRC57-201ENST00000323443 7351 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 AC007952.5-201ENST00000572818 1486 ntBASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 CAST-206ENST00000395812 4506 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 SLC25A24-203ENST00000565488 4271 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 PUM2-203ENST00000361078 6251 ntTSL 2 BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 SEMA6D-206ENST00000389428 5874 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
KCNIP3Q9Y2W7 SNORA50C-201ENST00000408535 133 ntBASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms