Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AF186996.6-201ENST00000485294 149 ntBASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 KRT18P42-201ENST00000505048 1255 ntBASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 AC092687.3-201ENST00000606907 393 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 AC027601.5-201ENST00000624065 2482 ntBASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 AC005077.3-201ENST00000449614 213 ntBASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 MIR4640-201ENST00000581824 90 ntBASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 AC022382.1-201ENST00000602768 336 ntBASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
CCDC88AQ3V6T2 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC88AQ3V6T2 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC88AQ3V6T2 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC88AQ3V6T2 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC16.58■□□□□ 0.25
CCDC88AQ3V6T2 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC16.58■□□□□ 0.25
CCDC88AQ3V6T2 AC026748.1-201ENST00000624349 3251 ntBASIC16.58■□□□□ 0.25
CCDC88AQ3V6T2 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC88AQ3V6T2 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC16.58■□□□□ 0.25
CCDC88AQ3V6T2 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC88AQ3V6T2 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC88AQ3V6T2 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 SRP9P1-201ENST00000445874 261 ntBASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 AC022121.1-201ENST00000484584 579 ntBASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 SOX2-OT-228ENST00000597828 864 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 DUX4L33-201ENST00000635217 958 ntBASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 AC116631.1-201ENST00000640685 576 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC88AQ3V6T2 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 SIGLEC20P-201ENST00000595243 1311 ntBASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 AL391647.1-201ENST00000395664 511 ntBASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms