Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CLK1P49759 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 MRVI1-216ENST00000547195 6155 ntTSL 2 BASIC13.26□□□□□ -0.29
CLK1P49759 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 MIER2-201ENST00000264819 6884 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
CLK1P49759 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.26□□□□□ -0.29
CLK1P49759 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.26□□□□□ -0.29
CLK1P49759 DGKD-202ENST00000409813 6228 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 HIST2H2BB-201ENST00000449108 381 ntBASIC13.26□□□□□ -0.29
CLK1P49759 CICP12-201ENST00000455801 843 ntBASIC13.26□□□□□ -0.29
CLK1P49759 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.26□□□□□ -0.29
CLK1P49759 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 AC119751.2-201ENST00000504529 210 ntBASIC13.26□□□□□ -0.29
CLK1P49759 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.26□□□□□ -0.29
CLK1P49759 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 RHPN1-AS1-201ENST00000518049 1918 ntBASIC13.26□□□□□ -0.29
CLK1P49759 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 DLX4-206ENST00000611342 1662 ntBASIC13.26□□□□□ -0.29
CLK1P49759 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.26□□□□□ -0.29
CLK1P49759 LDB3-205ENST00000429277 5436 ntTSL 2 BASIC13.26□□□□□ -0.29
CLK1P49759 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
CLK1P49759 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC13.26□□□□□ -0.29
CLK1P49759 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
CLK1P49759 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 ZNF398-201ENST00000426851 5268 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CLK1P49759 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 AP000437.1-201ENST00000624057 2085 ntBASIC13.25□□□□□ -0.29
CLK1P49759 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC13.25□□□□□ -0.29
CLK1P49759 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 AC022497.1-201ENST00000624916 3691 ntBASIC13.25□□□□□ -0.29
CLK1P49759 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CLK1P49759 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.25□□□□□ -0.29
CLK1P49759 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CLK1P49759 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 EIF2AK1-201ENST00000199389 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
CLK1P49759 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 SPATA13-203ENST00000382108 8463 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CLK1P49759 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CLK1P49759 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC13.25□□□□□ -0.29
CLK1P49759 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CLK1P49759 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC13.25□□□□□ -0.29
CLK1P49759 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.25□□□□□ -0.29
CLK1P49759 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CLK1P49759 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.25□□□□□ -0.29
CLK1P49759 WBP2-203ENST00000433525 928 ntTSL 2 BASIC13.25□□□□□ -0.29
CLK1P49759 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
CLK1P49759 NOP2-220ENST00000545915 630 ntTSL 2 BASIC13.25□□□□□ -0.29
CLK1P49759 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.25□□□□□ -0.29
CLK1P49759 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CLK1P49759 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.25□□□□□ -0.29
CLK1P49759 AC010328.2-201ENST00000597698 1111 ntBASIC13.25□□□□□ -0.29
CLK1P49759 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.25□□□□□ -0.29
CLK1P49759 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms