Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
COL8A1P27658 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC12.22□□□□□ -0.45
COL8A1P27658 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC12.22□□□□□ -0.45
COL8A1P27658 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
COL8A1P27658 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 AC010422.1-201ENST00000414548 543 ntTSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 KRT18P62-201ENST00000446618 1287 ntBASIC12.22□□□□□ -0.45
COL8A1P27658 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC12.22□□□□□ -0.45
COL8A1P27658 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC12.22□□□□□ -0.45
COL8A1P27658 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC12.22□□□□□ -0.45
COL8A1P27658 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC12.22□□□□□ -0.45
COL8A1P27658 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC12.22□□□□□ -0.45
COL8A1P27658 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC12.22□□□□□ -0.45
COL8A1P27658 ETFRF1-207ENST00000556351 838 ntAPPRIS ALT1 TSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 AL132657.2-201ENST00000564417 358 ntBASIC12.22□□□□□ -0.45
COL8A1P27658 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 MIR4640-201ENST00000581824 90 ntBASIC12.22□□□□□ -0.45
COL8A1P27658 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC12.22□□□□□ -0.45
COL8A1P27658 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC12.22□□□□□ -0.45
COL8A1P27658 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC12.22□□□□□ -0.45
COL8A1P27658 KLK13-207ENST00000596955 737 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC12.22□□□□□ -0.45
COL8A1P27658 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC12.22□□□□□ -0.45
COL8A1P27658 AC026336.4-201ENST00000624565 1050 ntBASIC12.22□□□□□ -0.45
COL8A1P27658 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC12.22□□□□□ -0.45
COL8A1P27658 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC12.22□□□□□ -0.45
COL8A1P27658 AL590556.2-202ENST00000636906 844 ntBASIC12.22□□□□□ -0.45
COL8A1P27658 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 AC007686.3-201ENST00000619017 3487 ntBASIC12.22□□□□□ -0.45
COL8A1P27658 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12.22□□□□□ -0.45
COL8A1P27658 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC12.22□□□□□ -0.45
COL8A1P27658 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC12.21□□□□□ -0.45
COL8A1P27658 POR-201ENST00000394893 2532 ntTSL 5 BASIC12.21□□□□□ -0.45
COL8A1P27658 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
COL8A1P27658 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC12.21□□□□□ -0.45
COL8A1P27658 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC12.21□□□□□ -0.45
COL8A1P27658 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
COL8A1P27658 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC12.21□□□□□ -0.45
COL8A1P27658 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 AC022762.2-201ENST00000600308 1353 ntBASIC12.21□□□□□ -0.45
COL8A1P27658 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC12.21□□□□□ -0.45
COL8A1P27658 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC12.21□□□□□ -0.45
COL8A1P27658 NIN-202ENST00000324330 4364 ntTSL 5 BASIC12.21□□□□□ -0.45
COL8A1P27658 PEG13-201ENST00000631594 5667 ntBASIC12.21□□□□□ -0.45
COL8A1P27658 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
COL8A1P27658 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
COL8A1P27658 GH1-203ENST00000351388 685 ntTSL 2 BASIC12.21□□□□□ -0.45
COL8A1P27658 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC12.21□□□□□ -0.45
COL8A1P27658 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 BX088651.3-201ENST00000418155 352 ntBASIC12.21□□□□□ -0.45
COL8A1P27658 HNRNPA1P25-201ENST00000422644 937 ntBASIC12.21□□□□□ -0.45
COL8A1P27658 PPP1R2P4-201ENST00000424051 595 ntBASIC12.21□□□□□ -0.45
COL8A1P27658 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC12.21□□□□□ -0.45
COL8A1P27658 RBPMSLP-201ENST00000433427 502 ntBASIC12.21□□□□□ -0.45
COL8A1P27658 OR4C14P-201ENST00000440929 923 ntBASIC12.21□□□□□ -0.45
COL8A1P27658 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC12.21□□□□□ -0.45
COL8A1P27658 AC124312.2-201ENST00000546615 427 ntTSL 3 BASIC12.21□□□□□ -0.45
COL8A1P27658 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC12.21□□□□□ -0.45
COL8A1P27658 AL359219.1-201ENST00000556311 934 ntBASIC12.21□□□□□ -0.45
COL8A1P27658 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC12.21□□□□□ -0.45
COL8A1P27658 MT3-202ENST00000561640 514 ntTSL 3 BASIC12.21□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms