Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SSR4P1-201ENST00000415143 412 ntBASIC14.29□□□□□ -0.12
COL9A1P20849 PPP1R2P4-201ENST00000424051 595 ntBASIC14.29□□□□□ -0.12
COL9A1P20849 AC012513.2-201ENST00000441511 1137 ntBASIC14.29□□□□□ -0.12
COL9A1P20849 LINC01297-202ENST00000453395 624 ntTSL 5 BASIC14.29□□□□□ -0.12
COL9A1P20849 RN7SL33P-201ENST00000462543 342 ntBASIC14.29□□□□□ -0.12
COL9A1P20849 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 MARK2P17-201ENST00000498560 841 ntBASIC14.29□□□□□ -0.12
COL9A1P20849 EEF1GP8-201ENST00000506566 1154 ntBASIC14.29□□□□□ -0.12
COL9A1P20849 MEF2C-AS1-205ENST00000509179 388 ntTSL 5 BASIC14.29□□□□□ -0.12
COL9A1P20849 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 AC145285.5-201ENST00000562217 361 ntBASIC14.29□□□□□ -0.12
COL9A1P20849 LINC01571-201ENST00000563603 811 ntTSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 AC109597.2-201ENST00000569407 927 ntTSL 3 BASIC14.29□□□□□ -0.12
COL9A1P20849 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC14.29□□□□□ -0.12
COL9A1P20849 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC14.29□□□□□ -0.12
COL9A1P20849 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC14.29□□□□□ -0.12
COL9A1P20849 AC116631.1-201ENST00000640685 576 ntTSL 5 BASIC14.29□□□□□ -0.12
COL9A1P20849 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 FKBP4P7-201ENST00000433874 1363 ntBASIC14.29□□□□□ -0.12
COL9A1P20849 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.29□□□□□ -0.12
COL9A1P20849 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
COL9A1P20849 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.29□□□□□ -0.12
COL9A1P20849 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
COL9A1P20849 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.28□□□□□ -0.12
COL9A1P20849 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.28□□□□□ -0.12
COL9A1P20849 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC14.28□□□□□ -0.12
COL9A1P20849 ATP6AP2-204ENST00000447485 1254 ntTSL 5 BASIC14.28□□□□□ -0.12
COL9A1P20849 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.28□□□□□ -0.12
COL9A1P20849 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.28□□□□□ -0.12
COL9A1P20849 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 CFL1P1-204ENST00000456375 424 ntTSL 3 BASIC14.28□□□□□ -0.12
COL9A1P20849 IGKV2-28-201ENST00000482769 390 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
COL9A1P20849 AC022424.2-201ENST00000514848 454 ntTSL 2 BASIC14.28□□□□□ -0.12
COL9A1P20849 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
COL9A1P20849 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC14.28□□□□□ -0.12
COL9A1P20849 RPL10P8-201ENST00000522888 313 ntBASIC14.28□□□□□ -0.12
COL9A1P20849 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC14.28□□□□□ -0.12
COL9A1P20849 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC14.28□□□□□ -0.12
COL9A1P20849 AC027290.1-201ENST00000537827 484 ntTSL 5 BASIC14.28□□□□□ -0.12
COL9A1P20849 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC14.28□□□□□ -0.12
COL9A1P20849 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.28□□□□□ -0.12
COL9A1P20849 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.28□□□□□ -0.12
COL9A1P20849 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC14.28□□□□□ -0.12
COL9A1P20849 MIR4760-201ENST00000585040 80 ntBASIC14.28□□□□□ -0.12
COL9A1P20849 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC14.28□□□□□ -0.12
COL9A1P20849 AP005264.5-201ENST00000590066 467 ntBASIC14.28□□□□□ -0.12
COL9A1P20849 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 AC011458.1-201ENST00000604034 617 ntBASIC14.28□□□□□ -0.12
COL9A1P20849 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC14.28□□□□□ -0.12
COL9A1P20849 AL669831.3-208ENST00000634337 891 ntTSL 5 BASIC14.28□□□□□ -0.12
COL9A1P20849 AC245369.8-201ENST00000636589 306 ntBASIC14.28□□□□□ -0.12
COL9A1P20849 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL9A1P20849 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL9A1P20849 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL9A1P20849 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
COL9A1P20849 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
COL9A1P20849 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
COL9A1P20849 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.12
COL9A1P20849 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL9A1P20849 SLC25A19-204ENST00000416858 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms