Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 DDX6P2-201ENST00000619520 1455 ntBASIC13.83□□□□□ -0.2
COL6A3P12111 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A3P12111 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A3P12111 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A3P12111 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
COL6A3P12111 ZNRD1-202ENST00000359374 743 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A3P12111 APTX-203ENST00000379813 1121 ntTSL 5 BASIC13.83□□□□□ -0.2
COL6A3P12111 APTX-220ENST00000476858 1068 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A3P12111 FGL1-206ENST00000518650 1093 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
COL6A3P12111 AP001189.3-201ENST00000531511 651 ntTSL 3 BASIC13.83□□□□□ -0.2
COL6A3P12111 AC131009.2-201ENST00000542763 770 ntTSL 3 BASIC13.83□□□□□ -0.2
COL6A3P12111 AC008993.1-201ENST00000632280 776 ntBASIC13.83□□□□□ -0.2
COL6A3P12111 AC083841.4-201ENST00000637396 352 ntBASIC13.83□□□□□ -0.2
COL6A3P12111 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL6A3P12111 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC13.82□□□□□ -0.2
COL6A3P12111 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 ZFHX4-AS1-201ENST00000518143 1711 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
COL6A3P12111 NR1I3-210ENST00000437437 973 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 RN7SL309P-201ENST00000491364 286 ntBASIC13.82□□□□□ -0.2
COL6A3P12111 AC020917.1-201ENST00000494084 893 ntBASIC13.82□□□□□ -0.2
COL6A3P12111 GPR79-201ENST00000498175 868 ntBASIC13.82□□□□□ -0.2
COL6A3P12111 MIR4296-201ENST00000581038 88 ntBASIC13.82□□□□□ -0.2
COL6A3P12111 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
COL6A3P12111 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
COL6A3P12111 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC13.82□□□□□ -0.2
COL6A3P12111 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.82□□□□□ -0.2
COL6A3P12111 ARMCX6-201ENST00000361910 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
COL6A3P12111 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC13.82□□□□□ -0.2
COL6A3P12111 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.82□□□□□ -0.2
COL6A3P12111 SULT1A3-202ENST00000395138 1326 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 RN7SKP255-201ENST00000363442 313 ntBASIC13.82□□□□□ -0.2
COL6A3P12111 RN7SKP203-201ENST00000363618 332 ntBASIC13.82□□□□□ -0.2
COL6A3P12111 RN7SKP71-201ENST00000364558 318 ntBASIC13.82□□□□□ -0.2
COL6A3P12111 7SK.1-201ENST00000365328 331 ntBASIC13.82□□□□□ -0.2
COL6A3P12111 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 FKBP1A-201ENST00000381715 705 ntTSL 2 BASIC13.82□□□□□ -0.2
COL6A3P12111 AL121972.2-202ENST00000429386 586 ntTSL 4 BASIC13.82□□□□□ -0.2
COL6A3P12111 LINC00700-202ENST00000438372 777 ntTSL 5 BASIC13.82□□□□□ -0.2
COL6A3P12111 HTR4-210ENST00000521735 1242 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 PIGH-210ENST00000560722 903 ntAPPRIS ALT1 TSL 2 BASIC13.82□□□□□ -0.2
COL6A3P12111 AC105105.4-201ENST00000610389 713 ntBASIC13.82□□□□□ -0.2
COL6A3P12111 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.82□□□□□ -0.2
COL6A3P12111 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 USP39-207ENST00000450066 2086 ntTSL 2 BASIC13.82□□□□□ -0.2
COL6A3P12111 AC023830.3-201ENST00000612995 1455 ntBASIC13.82□□□□□ -0.2
COL6A3P12111 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL6A3P12111 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 CACNG1-201ENST00000226021 1266 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 EXOSC1-204ENST00000370902 923 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 IMMP2L-204ENST00000447215 1164 ntTSL 3 BASIC13.81□□□□□ -0.2
COL6A3P12111 AC007163.1-201ENST00000447972 877 ntTSL 5 BASIC13.81□□□□□ -0.2
COL6A3P12111 AC084064.1-201ENST00000569938 419 ntTSL 2 BASIC13.81□□□□□ -0.2
COL6A3P12111 RN7SL405P-201ENST00000582502 289 ntBASIC13.81□□□□□ -0.2
COL6A3P12111 LINC00969-247ENST00000608737 956 ntTSL 5 BASIC13.81□□□□□ -0.2
COL6A3P12111 C2orf27AP1-201ENST00000618128 586 ntBASIC13.81□□□□□ -0.2
COL6A3P12111 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 CENPK-215ENST00000514814 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC13.81□□□□□ -0.2
COL6A3P12111 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 ZNF684-203ENST00000372699 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 ACR-201ENST00000216139 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 CHCHD10-204ENST00000520222 384 ntTSL 3 BASIC13.81□□□□□ -0.2
COL6A3P12111 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 AC100830.3-201ENST00000583044 554 ntBASIC13.81□□□□□ -0.2
COL6A3P12111 AC092723.2-201ENST00000624955 793 ntBASIC13.81□□□□□ -0.2
COL6A3P12111 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.81□□□□□ -0.2
COL6A3P12111 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC13.81□□□□□ -0.2
COL6A3P12111 AKNA-203ENST00000312033 3334 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL6A3P12111 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms