Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 OS9-204ENST00000389146 2091 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC3P19447 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
ERCC3P19447 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
ERCC3P19447 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
ERCC3P19447 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC3P19447 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 AL139008.1-201ENST00000437894 228 ntBASIC16.22■□□□□ 0.19
ERCC3P19447 PPOX-204ENST00000462866 473 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC3P19447 RN7SL375P-201ENST00000492442 298 ntBASIC16.22■□□□□ 0.19
ERCC3P19447 CHCHD2P2-201ENST00000503744 321 ntBASIC16.22■□□□□ 0.19
ERCC3P19447 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
ERCC3P19447 AC012073.1-201ENST00000606114 1108 ntBASIC16.22■□□□□ 0.19
ERCC3P19447 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC16.22■□□□□ 0.19
ERCC3P19447 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC3P19447 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC3P19447 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 ODCP-201ENST00000459650 1639 ntBASIC16.22■□□□□ 0.19
ERCC3P19447 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC16.22■□□□□ 0.19
ERCC3P19447 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC16.21■□□□□ 0.19
ERCC3P19447 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
ERCC3P19447 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC16.21■□□□□ 0.19
ERCC3P19447 SRC-202ENST00000373558 4304 ntTSL 5 BASIC16.21■□□□□ 0.19
ERCC3P19447 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
ERCC3P19447 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
ERCC3P19447 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
ERCC3P19447 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
ERCC3P19447 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC16.21■□□□□ 0.19
ERCC3P19447 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
ERCC3P19447 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC16.21■□□□□ 0.19
ERCC3P19447 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
ERCC3P19447 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC16.21■□□□□ 0.19
ERCC3P19447 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC16.21■□□□□ 0.19
ERCC3P19447 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC16.21■□□□□ 0.19
ERCC3P19447 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC16.21■□□□□ 0.19
ERCC3P19447 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
ERCC3P19447 AL512310.5-201ENST00000551999 515 ntBASIC16.21■□□□□ 0.19
ERCC3P19447 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
ERCC3P19447 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC16.21■□□□□ 0.19
ERCC3P19447 AL359091.4-201ENST00000610052 409 ntBASIC16.21■□□□□ 0.19
ERCC3P19447 AC091769.1-201ENST00000619576 568 ntBASIC16.21■□□□□ 0.19
ERCC3P19447 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
ERCC3P19447 AC007952.5-201ENST00000572818 1486 ntBASIC16.21■□□□□ 0.19
ERCC3P19447 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.21■□□□□ 0.18
ERCC3P19447 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
ERCC3P19447 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
ERCC3P19447 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC16.21■□□□□ 0.18
ERCC3P19447 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC3P19447 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC3P19447 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC3P19447 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC16.2■□□□□ 0.18
ERCC3P19447 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC3P19447 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC3P19447 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC3P19447 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC3P19447 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC3P19447 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.2■□□□□ 0.18
ERCC3P19447 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
ERCC3P19447 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC16.2■□□□□ 0.18
ERCC3P19447 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.2■□□□□ 0.18
ERCC3P19447 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms