Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 SETD4-207ENST00000399215 4272 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 NKAP-201ENST00000371410 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.78■□□□□ 0.12
TPM4P67936 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
TPM4P67936 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 SNORA50C-201ENST00000408535 133 ntBASIC15.78■□□□□ 0.12
TPM4P67936 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.78■□□□□ 0.12
TPM4P67936 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 AL355994.2-201ENST00000447882 704 ntBASIC15.78■□□□□ 0.12
TPM4P67936 UGT1A2P-201ENST00000454886 866 ntBASIC15.78■□□□□ 0.12
TPM4P67936 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.78■□□□□ 0.12
TPM4P67936 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
TPM4P67936 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
TPM4P67936 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC15.78■□□□□ 0.12
TPM4P67936 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.78■□□□□ 0.12
TPM4P67936 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 AC124068.2-201ENST00000569473 1109 ntBASIC15.78■□□□□ 0.12
TPM4P67936 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 SNORA50.1-201ENST00000628590 135 ntBASIC15.78■□□□□ 0.12
TPM4P67936 TMEM120B-204ENST00000449592 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
TPM4P67936 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
TPM4P67936 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 BCAS4-202ENST00000371608 6680 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC15.78■□□□□ 0.12
TPM4P67936 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
TPM4P67936 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TPM4P67936 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC15.78■□□□□ 0.12
TPM4P67936 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.77■□□□□ 0.12
TPM4P67936 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.12
TPM4P67936 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
TPM4P67936 SEZ6-202ENST00000335960 4195 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
TPM4P67936 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.12
TPM4P67936 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 PID1-202ENST00000392054 2745 ntTSL 2 BASIC15.77■□□□□ 0.12
TPM4P67936 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
TPM4P67936 ZNF106-205ENST00000565611 5081 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC15.77■□□□□ 0.12
TPM4P67936 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 QSOX1-202ENST00000367602 9311 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 BSDC1-201ENST00000341071 4599 ntTSL 2 BASIC15.77■□□□□ 0.12
TPM4P67936 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 VWA5B1-201ENST00000289815 4475 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
TPM4P67936 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
TPM4P67936 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.77■□□□□ 0.12
TPM4P67936 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.77■□□□□ 0.12
TPM4P67936 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
TPM4P67936 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.77■□□□□ 0.12
TPM4P67936 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.77■□□□□ 0.12
TPM4P67936 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.77■□□□□ 0.12
TPM4P67936 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.77■□□□□ 0.12
TPM4P67936 AC010319.3-201ENST00000597028 470 ntBASIC15.77■□□□□ 0.12
TPM4P67936 AC073413.1-201ENST00000603927 732 ntBASIC15.77■□□□□ 0.12
TPM4P67936 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
TPM4P67936 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.77■□□□□ 0.12
TPM4P67936 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM4P67936 LRRN2-201ENST00000367175 5036 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
TPM4P67936 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TPM4P67936 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
TPM4P67936 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.77■□□□□ 0.11
TPM4P67936 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TPM4P67936 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
TPM4P67936 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TPM4P67936 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms