Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC14.86□□□□□ -0.03
LIG3P49916 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LIG3P49916 KRTAP10-13P-201ENST00000412914 571 ntBASIC14.86□□□□□ -0.03
LIG3P49916 AL354877.1-201ENST00000424412 413 ntBASIC14.86□□□□□ -0.03
LIG3P49916 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC14.86□□□□□ -0.03
LIG3P49916 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC14.86□□□□□ -0.03
LIG3P49916 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
LIG3P49916 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.86□□□□□ -0.03
LIG3P49916 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC14.86□□□□□ -0.03
LIG3P49916 AC131206.1-201ENST00000538078 1211 ntBASIC14.86□□□□□ -0.03
LIG3P49916 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
LIG3P49916 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC14.86□□□□□ -0.03
LIG3P49916 EMC4-209ENST00000559421 497 ntTSL 2 BASIC14.86□□□□□ -0.03
LIG3P49916 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC14.86□□□□□ -0.03
LIG3P49916 KLK11-210ENST00000600362 759 ntTSL 3 BASIC14.86□□□□□ -0.03
LIG3P49916 AL022328.3-201ENST00000607943 679 ntBASIC14.86□□□□□ -0.03
LIG3P49916 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.86□□□□□ -0.03
LIG3P49916 AL008638.5-201ENST00000623814 1298 ntBASIC14.86□□□□□ -0.03
LIG3P49916 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LIG3P49916 DGKA-202ENST00000394147 2770 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
LIG3P49916 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 PIAS2-201ENST00000324794 4543 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC14.86□□□□□ -0.03
LIG3P49916 ELOVL4-201ENST00000369816 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC14.86□□□□□ -0.03
LIG3P49916 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
LIG3P49916 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC14.86□□□□□ -0.03
LIG3P49916 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
LIG3P49916 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 NCLP1-201ENST00000445357 1963 ntBASIC14.85□□□□□ -0.03
LIG3P49916 STK25-235ENST00000543554 2556 ntTSL 2 BASIC14.85□□□□□ -0.03
LIG3P49916 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 CARS-214ENST00000529772 2637 ntTSL 2 BASIC14.85□□□□□ -0.03
LIG3P49916 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC14.85□□□□□ -0.03
LIG3P49916 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
LIG3P49916 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC14.85□□□□□ -0.03
LIG3P49916 ZBED8-201ENST00000408953 2851 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
LIG3P49916 PDE4A-204ENST00000440014 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
LIG3P49916 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.85□□□□□ -0.03
LIG3P49916 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.85□□□□□ -0.03
LIG3P49916 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.85□□□□□ -0.03
LIG3P49916 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.85□□□□□ -0.03
LIG3P49916 VENTX-201ENST00000325980 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 FAM102A-202ENST00000373084 3352 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 GUCY1B3-204ENST00000505154 2316 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.85□□□□□ -0.03
LIG3P49916 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.85□□□□□ -0.03
LIG3P49916 HNRNPA1P63-201ENST00000427917 963 ntBASIC14.85□□□□□ -0.03
LIG3P49916 POM121L10P-201ENST00000436994 1285 ntBASIC14.85□□□□□ -0.03
LIG3P49916 AC006033.1-201ENST00000440505 426 ntBASIC14.85□□□□□ -0.03
LIG3P49916 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.85□□□□□ -0.03
LIG3P49916 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.85□□□□□ -0.03
LIG3P49916 CD74-212ENST00000524315 584 ntTSL 5 BASIC14.85□□□□□ -0.03
LIG3P49916 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC14.85□□□□□ -0.03
LIG3P49916 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC14.85□□□□□ -0.03
LIG3P49916 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.85□□□□□ -0.03
LIG3P49916 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC14.85□□□□□ -0.03
LIG3P49916 SHC1P1-201ENST00000425230 1745 ntBASIC14.85□□□□□ -0.03
LIG3P49916 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.85□□□□□ -0.03
LIG3P49916 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC14.85□□□□□ -0.03
LIG3P49916 PCDHB17P-202ENST00000623466 3066 ntBASIC14.85□□□□□ -0.03
LIG3P49916 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 PERM1-202ENST00000433179 3340 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
LIG3P49916 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.85□□□□□ -0.03
LIG3P49916 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC14.85□□□□□ -0.03
LIG3P49916 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIG3P49916 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
LIG3P49916 AC011498.7-201ENST00000624986 2027 ntBASIC14.85□□□□□ -0.03
LIG3P49916 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
LIG3P49916 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LIG3P49916 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.84□□□□□ -0.03
LIG3P49916 DLX4-206ENST00000611342 1662 ntBASIC14.84□□□□□ -0.03
LIG3P49916 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
LIG3P49916 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
LIG3P49916 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LIG3P49916 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.84□□□□□ -0.03
LIG3P49916 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.84□□□□□ -0.03
LIG3P49916 NPTN-IT1-201ENST00000628401 2283 ntBASIC14.84□□□□□ -0.03
LIG3P49916 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 AC018735.1-201ENST00000437208 1502 ntBASIC14.84□□□□□ -0.03
LIG3P49916 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms