Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 SNORD23-201ENST00000408876 110 ntBASIC13□□□□□ -0.33
COL5A1P20908 RPL18AP15-201ENST00000430258 517 ntBASIC13□□□□□ -0.33
COL5A1P20908 RPE-208ENST00000436630 1128 ntTSL 2 BASIC13□□□□□ -0.33
COL5A1P20908 AC092865.2-201ENST00000439409 971 ntBASIC13□□□□□ -0.33
COL5A1P20908 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 RPSAP16-201ENST00000447583 821 ntBASIC13□□□□□ -0.33
COL5A1P20908 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC13□□□□□ -0.33
COL5A1P20908 KRT18P42-201ENST00000505048 1255 ntBASIC13□□□□□ -0.33
COL5A1P20908 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC13□□□□□ -0.33
COL5A1P20908 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC13□□□□□ -0.33
COL5A1P20908 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 AC254633.1-201ENST00000606790 345 ntBASIC13□□□□□ -0.33
COL5A1P20908 MDC1-209ENST00000613547 830 ntTSL 5 BASIC13□□□□□ -0.33
COL5A1P20908 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC13□□□□□ -0.33
COL5A1P20908 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13□□□□□ -0.33
COL5A1P20908 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13□□□□□ -0.33
COL5A1P20908 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13□□□□□ -0.33
COL5A1P20908 BEND3P1-201ENST00000421591 1944 ntBASIC13□□□□□ -0.33
COL5A1P20908 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 AC111188.1-201ENST00000525758 1833 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
COL5A1P20908 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 NME1-209ENST00000511355 1645 ntTSL 5 BASIC13□□□□□ -0.33
COL5A1P20908 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC13□□□□□ -0.33
COL5A1P20908 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
COL5A1P20908 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
COL5A1P20908 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC13□□□□□ -0.33
COL5A1P20908 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 RNA5SP84-201ENST00000364740 107 ntBASIC12.99□□□□□ -0.33
COL5A1P20908 MARCKSL1P2-201ENST00000401037 976 ntBASIC12.99□□□□□ -0.33
COL5A1P20908 AP001092.1-201ENST00000433606 469 ntTSL 3 BASIC12.99□□□□□ -0.33
COL5A1P20908 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC12.99□□□□□ -0.33
COL5A1P20908 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
COL5A1P20908 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC12.99□□□□□ -0.33
COL5A1P20908 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC12.99□□□□□ -0.33
COL5A1P20908 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC12.99□□□□□ -0.33
COL5A1P20908 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC12.99□□□□□ -0.33
COL5A1P20908 C19orf53-202ENST00000588234 873 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 AL031768.1-201ENST00000606542 701 ntBASIC12.99□□□□□ -0.33
COL5A1P20908 OR3A1-202ENST00000615105 966 ntBASIC12.99□□□□□ -0.33
COL5A1P20908 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
COL5A1P20908 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
COL5A1P20908 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
COL5A1P20908 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
COL5A1P20908 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
COL5A1P20908 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
COL5A1P20908 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 AC008038.1-201ENST00000634247 1314 ntBASIC12.99□□□□□ -0.33
COL5A1P20908 AL031587.5-201ENST00000624344 1849 ntBASIC12.99□□□□□ -0.33
COL5A1P20908 OR7E12P-201ENST00000344740 973 ntBASIC12.99□□□□□ -0.33
COL5A1P20908 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 AC105443.1-201ENST00000433754 712 ntBASIC12.99□□□□□ -0.33
COL5A1P20908 RN7SL838P-201ENST00000481676 295 ntBASIC12.99□□□□□ -0.33
COL5A1P20908 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 AC114812.4-201ENST00000506676 757 ntBASIC12.99□□□□□ -0.33
COL5A1P20908 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC12.99□□□□□ -0.33
COL5A1P20908 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
COL5A1P20908 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC12.99□□□□□ -0.33
COL5A1P20908 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC12.99□□□□□ -0.33
COL5A1P20908 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC12.99□□□□□ -0.33
COL5A1P20908 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC12.99□□□□□ -0.33
COL5A1P20908 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC12.99□□□□□ -0.33
COL5A1P20908 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC12.99□□□□□ -0.33
COL5A1P20908 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC12.99□□□□□ -0.33
COL5A1P20908 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC12.99□□□□□ -0.33
COL5A1P20908 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
COL5A1P20908 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
COL5A1P20908 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
COL5A1P20908 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
COL5A1P20908 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC12.99□□□□□ -0.33
COL5A1P20908 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL5A1P20908 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC12.99□□□□□ -0.33
COL5A1P20908 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms