Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 MARK2P17-201ENST00000498560 841 ntBASIC15.12■□□□□ 0.01
LRCH3Q96II8 AC093300.1-201ENST00000510368 1201 ntBASIC15.12■□□□□ 0.01
LRCH3Q96II8 HNRNPA1P72-201ENST00000529511 967 ntBASIC15.12■□□□□ 0.01
LRCH3Q96II8 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC15.12■□□□□ 0.01
LRCH3Q96II8 AL136298.3-201ENST00000556746 445 ntBASIC15.12■□□□□ 0.01
LRCH3Q96II8 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LRCH3Q96II8 ABCD1P3-201ENST00000562927 605 ntBASIC15.12■□□□□ 0.01
LRCH3Q96II8 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC15.12■□□□□ 0.01
LRCH3Q96II8 AC016590.1-201ENST00000588763 420 ntTSL 2 BASIC15.12■□□□□ 0.01
LRCH3Q96II8 KF455155.1-201ENST00000604493 303 ntBASIC15.12■□□□□ 0.01
LRCH3Q96II8 AC144521.1-201ENST00000607148 956 ntBASIC15.12■□□□□ 0.01
LRCH3Q96II8 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC15.12■□□□□ 0.01
LRCH3Q96II8 AC114296.1-202ENST00000638019 771 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
LRCH3Q96II8 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LRCH3Q96II8 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRCH3Q96II8 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
LRCH3Q96II8 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRCH3Q96II8 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRCH3Q96II8 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRCH3Q96II8 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRCH3Q96II8 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC15.12■□□□□ 0.01
LRCH3Q96II8 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC15.12■□□□□ 0.01
LRCH3Q96II8 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.12■□□□□ 0.01
LRCH3Q96II8 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRCH3Q96II8 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.12■□□□□ 0.01
LRCH3Q96II8 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.11■□□□□ 0.01
LRCH3Q96II8 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 AC103563.1-201ENST00000429316 123 ntBASIC15.11■□□□□ 0.01
LRCH3Q96II8 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 TBC1D3P6-201ENST00000505954 962 ntBASIC15.11■□□□□ 0.01
LRCH3Q96II8 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 AC005740.1-201ENST00000515639 522 ntBASIC15.11■□□□□ 0.01
LRCH3Q96II8 KCNE3-202ENST00000525550 935 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 AC140658.4-201ENST00000561990 352 ntBASIC15.11■□□□□ 0.01
LRCH3Q96II8 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC15.11■□□□□ 0.01
LRCH3Q96II8 METTL15-210ENST00000634721 1182 ntTSL 5 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRCH3Q96II8 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
LRCH3Q96II8 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 RNF170-202ENST00000319073 1265 ntTSL 2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRCH3Q96II8 CCL19-202ENST00000378800 414 ntTSL 2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 PPP1R2P10-201ENST00000393023 595 ntBASIC15.1■□□□□ 0.01
LRCH3Q96II8 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 SPTLC1P3-201ENST00000403408 259 ntBASIC15.1■□□□□ 0.01
LRCH3Q96II8 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 PSMC1P2-201ENST00000423961 1204 ntBASIC15.1■□□□□ 0.01
LRCH3Q96II8 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
LRCH3Q96II8 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms