Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 RBMXP1-201ENST00000408004 1191 ntBASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 AC004910.1-201ENST00000433493 787 ntBASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 NDUFB2P1-201ENST00000506966 295 ntBASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 PHBP18-201ENST00000546648 813 ntBASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 AC005332.2-201ENST00000590010 930 ntBASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 AC021321.1-201ENST00000607397 1113 ntBASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 AC097474.1-201ENST00000506481 1371 ntBASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 RCC2P5-201ENST00000492126 1487 ntBASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC88AQ3V6T2 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 AC023051.2-201ENST00000541141 460 ntBASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 RBM14-205ENST00000443702 732 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 CDHR4-205ENST00000487256 1017 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 MST1L-204ENST00000545160 559 ntTSL 4 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 PPY-202ENST00000587006 431 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 SNX20-205ENST00000610485 557 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC88AQ3V6T2 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 AC007686.3-201ENST00000619017 3487 ntBASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 AF013593.1-201ENST00000458074 1487 ntBASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 AC114812.4-201ENST00000506676 757 ntBASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 AC103724.2-201ENST00000520355 476 ntBASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms