Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
PCDH1Q08174 MARK2P16-201ENST00000605714 1723 ntBASIC13.55□□□□□ -0.24
PCDH1Q08174 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 AL358781.1-202ENST00000321081 1360 ntBASIC13.55□□□□□ -0.24
PCDH1Q08174 Z98885.3-201ENST00000624882 1757 ntBASIC13.55□□□□□ -0.24
PCDH1Q08174 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC13.55□□□□□ -0.24
PCDH1Q08174 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC13.55□□□□□ -0.24
PCDH1Q08174 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC13.55□□□□□ -0.24
PCDH1Q08174 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.54□□□□□ -0.24
PCDH1Q08174 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 SDCCAG3P2-201ENST00000326105 1023 ntBASIC13.54□□□□□ -0.24
PCDH1Q08174 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC13.54□□□□□ -0.24
PCDH1Q08174 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC13.54□□□□□ -0.24
PCDH1Q08174 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC13.54□□□□□ -0.24
PCDH1Q08174 AP001258.2-201ENST00000529891 490 ntBASIC13.54□□□□□ -0.24
PCDH1Q08174 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 EMC4-209ENST00000559421 497 ntTSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC13.54□□□□□ -0.24
PCDH1Q08174 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 AC020658.7-201ENST00000624274 2442 ntBASIC13.54□□□□□ -0.24
PCDH1Q08174 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC13.54□□□□□ -0.24
PCDH1Q08174 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.54□□□□□ -0.24
PCDH1Q08174 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13.54□□□□□ -0.24
PCDH1Q08174 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC13.54□□□□□ -0.24
PCDH1Q08174 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 AC138028.6-201ENST00000616106 1482 ntBASIC13.54□□□□□ -0.24
PCDH1Q08174 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC13.54□□□□□ -0.24
PCDH1Q08174 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PCDH1Q08174 COL6A4P2-202ENST00000504443 2753 ntBASIC13.54□□□□□ -0.24
PCDH1Q08174 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 AL355102.3-201ENST00000554299 1678 ntBASIC13.53□□□□□ -0.24
PCDH1Q08174 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
PCDH1Q08174 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.53□□□□□ -0.24
PCDH1Q08174 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC13.53□□□□□ -0.24
PCDH1Q08174 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC13.53□□□□□ -0.24
PCDH1Q08174 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC13.53□□□□□ -0.24
PCDH1Q08174 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
PCDH1Q08174 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCDH1Q08174 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms