Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 MIR663B-201ENST00000408361 115 ntBASIC14.88□□□□□ -0.03
LIG3P49916 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
LIG3P49916 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
LIG3P49916 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC14.88□□□□□ -0.03
LIG3P49916 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC14.88□□□□□ -0.03
LIG3P49916 AC243960.2-201ENST00000600996 747 ntBASIC14.88□□□□□ -0.03
LIG3P49916 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
LIG3P49916 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC14.88□□□□□ -0.03
LIG3P49916 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 POM121L14P-201ENST00000406100 1558 ntBASIC14.88□□□□□ -0.03
LIG3P49916 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.88□□□□□ -0.03
LIG3P49916 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 KRT74-201ENST00000305620 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC14.88□□□□□ -0.03
LIG3P49916 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.88□□□□□ -0.03
LIG3P49916 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
LIG3P49916 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
LIG3P49916 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 ITGA2B-201ENST00000262407 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.87□□□□□ -0.03
LIG3P49916 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 KCNIP3-202ENST00000360990 2798 ntTSL 5 BASIC14.87□□□□□ -0.03
LIG3P49916 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC14.87□□□□□ -0.03
LIG3P49916 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 AC012531.1-201ENST00000562848 2680 ntBASIC14.87□□□□□ -0.03
LIG3P49916 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.87□□□□□ -0.03
LIG3P49916 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.87□□□□□ -0.03
LIG3P49916 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 AC107375.1-201ENST00000564464 2231 ntBASIC14.87□□□□□ -0.03
LIG3P49916 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC14.87□□□□□ -0.03
LIG3P49916 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
LIG3P49916 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.87□□□□□ -0.03
LIG3P49916 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC14.87□□□□□ -0.03
LIG3P49916 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.87□□□□□ -0.03
LIG3P49916 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC14.87□□□□□ -0.03
LIG3P49916 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC14.87□□□□□ -0.03
LIG3P49916 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC14.87□□□□□ -0.03
LIG3P49916 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 GPR182-203ENST00000622922 591 ntBASIC14.87□□□□□ -0.03
LIG3P49916 RHPN1-AS1-201ENST00000518049 1918 ntBASIC14.87□□□□□ -0.03
LIG3P49916 KRT17P5-202ENST00000444070 2552 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 TBC1D13-202ENST00000372648 3906 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
LIG3P49916 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC14.87□□□□□ -0.03
LIG3P49916 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
LIG3P49916 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIG3P49916 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.87□□□□□ -0.03
LIG3P49916 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
LIG3P49916 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 PDZRN3-208ENST00000479530 2778 ntTSL 2 BASIC14.86□□□□□ -0.03
LIG3P49916 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC14.86□□□□□ -0.03
LIG3P49916 TNK1-201ENST00000570896 3122 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
LIG3P49916 DNM1-213ENST00000628346 3835 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
LIG3P49916 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.86□□□□□ -0.03
LIG3P49916 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
LIG3P49916 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC14.86□□□□□ -0.03
LIG3P49916 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC14.86□□□□□ -0.03
LIG3P49916 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
LIG3P49916 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LIG3P49916 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIG3P49916 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms