Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC020907.1-201ENST00000616460 1350 ntBASIC11.58□□□□□ -0.56
CDX1P47902 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 OCA2-201ENST00000353809 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC11.58□□□□□ -0.56
CDX1P47902 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
CDX1P47902 MIR663B-201ENST00000408361 115 ntBASIC11.58□□□□□ -0.56
CDX1P47902 AC006033.1-201ENST00000440505 426 ntBASIC11.58□□□□□ -0.56
CDX1P47902 HSPB1P2-201ENST00000448722 546 ntBASIC11.58□□□□□ -0.56
CDX1P47902 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC11.58□□□□□ -0.56
CDX1P47902 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC11.58□□□□□ -0.56
CDX1P47902 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC11.58□□□□□ -0.56
CDX1P47902 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC11.58□□□□□ -0.56
CDX1P47902 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC11.58□□□□□ -0.56
CDX1P47902 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC11.58□□□□□ -0.56
CDX1P47902 AC008825.2-201ENST00000603374 718 ntBASIC11.58□□□□□ -0.56
CDX1P47902 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC11.58□□□□□ -0.56
CDX1P47902 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC11.58□□□□□ -0.56
CDX1P47902 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC11.58□□□□□ -0.56
CDX1P47902 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 HOXB13-201ENST00000290295 3467 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 Z98257.2-202ENST00000641138 1548 ntBASIC11.58□□□□□ -0.56
CDX1P47902 ZMPSTE24-201ENST00000372759 3108 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC11.58□□□□□ -0.56
CDX1P47902 RHOH-217ENST00000610353 2268 ntAPPRIS P1 TSL 4 BASIC11.58□□□□□ -0.56
CDX1P47902 AC018445.4-201ENST00000624066 2291 ntBASIC11.58□□□□□ -0.56
CDX1P47902 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 KCNIP3-202ENST00000360990 2798 ntTSL 5 BASIC11.58□□□□□ -0.56
CDX1P47902 DFFB-205ENST00000378209 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
CDX1P47902 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 SLC25A17-217ENST00000544408 2060 ntTSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 TVP23A-201ENST00000299866 3360 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 ZBED8-201ENST00000408953 2851 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
CDX1P47902 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC11.57□□□□□ -0.56
CDX1P47902 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC11.57□□□□□ -0.56
CDX1P47902 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 EGFLAM-204ENST00000397202 2398 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
CDX1P47902 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC11.57□□□□□ -0.56
CDX1P47902 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 PAM-203ENST00000346918 3302 ntTSL 5 BASIC11.57□□□□□ -0.56
CDX1P47902 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
CDX1P47902 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC11.57□□□□□ -0.56
CDX1P47902 NMRAL2P-204ENST00000423298 1792 ntTSL 5 BASIC11.57□□□□□ -0.56
CDX1P47902 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
CDX1P47902 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 TNK2-208ENST00000428187 4235 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
CDX1P47902 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
CDX1P47902 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC11.57□□□□□ -0.56
CDX1P47902 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC11.57□□□□□ -0.56
CDX1P47902 PTPA-218ENST00000435132 618 ntTSL 2 BASIC11.57□□□□□ -0.56
CDX1P47902 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC11.57□□□□□ -0.56
CDX1P47902 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC11.57□□□□□ -0.56
CDX1P47902 AC004898.1-201ENST00000451057 766 ntBASIC11.57□□□□□ -0.56
CDX1P47902 AC104306.2-201ENST00000451877 341 ntBASIC11.57□□□□□ -0.56
CDX1P47902 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
CDX1P47902 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC11.57□□□□□ -0.56
CDX1P47902 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CDX1P47902 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC11.57□□□□□ -0.56
CDX1P47902 EMC4-209ENST00000559421 497 ntTSL 2 BASIC11.57□□□□□ -0.56
CDX1P47902 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC11.57□□□□□ -0.56
CDX1P47902 KLK11-210ENST00000600362 759 ntTSL 3 BASIC11.57□□□□□ -0.56
CDX1P47902 AL118558.3-201ENST00000607414 1079 ntBASIC11.57□□□□□ -0.56
CDX1P47902 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC11.57□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms