Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 DLX4-206ENST00000611342 1662 ntBASIC12.01□□□□□ -0.49
SDCBPO00560 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC12.01□□□□□ -0.49
SDCBPO00560 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC12.01□□□□□ -0.49
SDCBPO00560 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC12.01□□□□□ -0.49
SDCBPO00560 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC12.01□□□□□ -0.49
SDCBPO00560 GAS5-209ENST00000430245 723 ntTSL 3 BASIC12.01□□□□□ -0.49
SDCBPO00560 GSAP-205ENST00000430584 600 ntTSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 CHMP1AP1-201ENST00000445563 662 ntBASIC12.01□□□□□ -0.49
SDCBPO00560 HIST2H2BB-201ENST00000449108 381 ntBASIC12.01□□□□□ -0.49
SDCBPO00560 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC12.01□□□□□ -0.49
SDCBPO00560 NCK2-206ENST00000522586 490 ntTSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 RAB43P1-201ENST00000561790 589 ntBASIC12.01□□□□□ -0.49
SDCBPO00560 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC12.01□□□□□ -0.49
SDCBPO00560 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC12.01□□□□□ -0.49
SDCBPO00560 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
SDCBPO00560 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
SDCBPO00560 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
SDCBPO00560 GPHN-203ENST00000478722 4297 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC12.01□□□□□ -0.49
SDCBPO00560 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC12.01□□□□□ -0.49
SDCBPO00560 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC12.01□□□□□ -0.49
SDCBPO00560 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 PPP1R26P2-201ENST00000611403 3595 ntBASIC12□□□□□ -0.49
SDCBPO00560 PPP6C-203ENST00000451402 4349 ntTSL 2 BASIC12□□□□□ -0.49
SDCBPO00560 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC12□□□□□ -0.49
SDCBPO00560 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC12□□□□□ -0.49
SDCBPO00560 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 RBM38-204ENST00000371219 760 ntTSL 2 BASIC12□□□□□ -0.49
SDCBPO00560 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC12□□□□□ -0.49
SDCBPO00560 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC12□□□□□ -0.49
SDCBPO00560 AC026954.1-201ENST00000429771 1293 ntBASIC12□□□□□ -0.49
SDCBPO00560 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC12□□□□□ -0.49
SDCBPO00560 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC12□□□□□ -0.49
SDCBPO00560 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 AC106886.1-201ENST00000568660 600 ntBASIC12□□□□□ -0.49
SDCBPO00560 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC12□□□□□ -0.49
SDCBPO00560 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC12□□□□□ -0.49
SDCBPO00560 RPS24-214ENST00000613865 538 ntTSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 AL162274.1-201ENST00000617191 1098 ntBASIC12□□□□□ -0.49
SDCBPO00560 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC12□□□□□ -0.49
SDCBPO00560 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC12□□□□□ -0.49
SDCBPO00560 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms