Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
VPS13CQ709C8 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC11.21□□□□□ -0.61
VPS13CQ709C8 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
VPS13CQ709C8 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
VPS13CQ709C8 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC11.21□□□□□ -0.61
VPS13CQ709C8 INCA1-202ENST00000574617 1260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
VPS13CQ709C8 RN7SL460P-201ENST00000582806 258 ntBASIC11.21□□□□□ -0.61
VPS13CQ709C8 AC148476.1-201ENST00000622182 705 ntBASIC11.21□□□□□ -0.61
VPS13CQ709C8 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC11.21□□□□□ -0.61
VPS13CQ709C8 AC114296.1-202ENST00000638019 771 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
VPS13CQ709C8 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
VPS13CQ709C8 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
VPS13CQ709C8 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
VPS13CQ709C8 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
VPS13CQ709C8 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC11.21□□□□□ -0.62
VPS13CQ709C8 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC11.21□□□□□ -0.62
VPS13CQ709C8 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC11.21□□□□□ -0.62
VPS13CQ709C8 NANOS3-202ENST00000397555 769 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
VPS13CQ709C8 AC000078.1-201ENST00000420617 682 ntBASIC11.21□□□□□ -0.62
VPS13CQ709C8 IDI2-AS1-204ENST00000437374 896 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 SRP9P1-201ENST00000445874 261 ntBASIC11.21□□□□□ -0.62
VPS13CQ709C8 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC11.21□□□□□ -0.62
VPS13CQ709C8 SMCO4-202ENST00000525141 889 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.62
VPS13CQ709C8 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.62
VPS13CQ709C8 PCTP-206ENST00000573500 919 ntTSL 3 BASIC11.21□□□□□ -0.62
VPS13CQ709C8 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC11.21□□□□□ -0.62
VPS13CQ709C8 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC11.21□□□□□ -0.62
VPS13CQ709C8 MIR8071-1-201ENST00000616769 65 ntBASIC11.21□□□□□ -0.62
VPS13CQ709C8 MIR8071-2-201ENST00000616772 65 ntBASIC11.21□□□□□ -0.62
VPS13CQ709C8 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.62
VPS13CQ709C8 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
VPS13CQ709C8 ZNF33A-205ENST00000469037 1530 ntTSL 5 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 SERPINB8P1-201ENST00000401898 377 ntBASIC11.2□□□□□ -0.62
VPS13CQ709C8 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 HNRNPA1P68-201ENST00000425806 979 ntBASIC11.2□□□□□ -0.62
VPS13CQ709C8 AL137077.1-201ENST00000442115 528 ntBASIC11.2□□□□□ -0.62
VPS13CQ709C8 SNORA47-201ENST00000458862 138 ntBASIC11.2□□□□□ -0.62
VPS13CQ709C8 AC090589.3-201ENST00000524412 574 ntTSL 5 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 RN7SL162P-201ENST00000579233 292 ntBASIC11.2□□□□□ -0.62
VPS13CQ709C8 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 TGFA-206ENST00000445399 812 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 METTL7AP1-201ENST00000547343 496 ntBASIC11.2□□□□□ -0.62
VPS13CQ709C8 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 MIF4GD-214ENST00000618645 1230 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 AC023590.1-202ENST00000366457 781 ntTSL 3 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 RPL35P1-201ENST00000450819 370 ntBASIC11.2□□□□□ -0.62
VPS13CQ709C8 CA6-205ENST00000480186 1493 ntTSL 2 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC11.2□□□□□ -0.62
VPS13CQ709C8 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
VPS13CQ709C8 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
VPS13CQ709C8 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
VPS13CQ709C8 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
VPS13CQ709C8 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
VPS13CQ709C8 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms