Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PCNAP12004 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.78□□□□□ -0.2
PCNAP12004 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.78□□□□□ -0.2
PCNAP12004 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC13.78□□□□□ -0.2
PCNAP12004 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
PCNAP12004 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC13.78□□□□□ -0.2
PCNAP12004 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 BRWD1P1-201ENST00000401091 371 ntBASIC13.78□□□□□ -0.2
PCNAP12004 VDAC1P1-201ENST00000439229 848 ntBASIC13.78□□□□□ -0.2
PCNAP12004 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.78□□□□□ -0.2
PCNAP12004 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.78□□□□□ -0.2
PCNAP12004 AL512310.5-201ENST00000551999 515 ntBASIC13.78□□□□□ -0.2
PCNAP12004 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC13.78□□□□□ -0.2
PCNAP12004 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.78□□□□□ -0.2
PCNAP12004 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.78□□□□□ -0.2
PCNAP12004 AC005324.6-201ENST00000587972 613 ntBASIC13.78□□□□□ -0.2
PCNAP12004 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.78□□□□□ -0.2
PCNAP12004 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
PCNAP12004 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.78□□□□□ -0.2
PCNAP12004 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC13.78□□□□□ -0.2
PCNAP12004 FAM90A7P-201ENST00000382628 1395 ntBASIC13.78□□□□□ -0.2
PCNAP12004 FAM90A23P-201ENST00000400136 1395 ntBASIC13.78□□□□□ -0.2
PCNAP12004 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC13.78□□□□□ -0.2
PCNAP12004 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.78□□□□□ -0.2
PCNAP12004 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC13.78□□□□□ -0.2
PCNAP12004 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
PCNAP12004 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC13.78□□□□□ -0.2
PCNAP12004 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
PCNAP12004 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC13.77□□□□□ -0.2
PCNAP12004 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC13.77□□□□□ -0.2
PCNAP12004 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC13.77□□□□□ -0.2
PCNAP12004 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
PCNAP12004 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC13.77□□□□□ -0.2
PCNAP12004 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
PCNAP12004 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.77□□□□□ -0.21
PCNAP12004 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.77□□□□□ -0.21
PCNAP12004 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC13.77□□□□□ -0.21
PCNAP12004 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
PCNAP12004 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
PCNAP12004 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
PCNAP12004 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
PCNAP12004 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
PCNAP12004 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
PCNAP12004 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
PCNAP12004 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
PCNAP12004 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.77□□□□□ -0.21
PCNAP12004 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
PCNAP12004 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13.77□□□□□ -0.21
PCNAP12004 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
PCNAP12004 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
PCNAP12004 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC13.77□□□□□ -0.21
PCNAP12004 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC13.77□□□□□ -0.21
PCNAP12004 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.77□□□□□ -0.21
PCNAP12004 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.77□□□□□ -0.21
PCNAP12004 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.77□□□□□ -0.21
PCNAP12004 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC13.77□□□□□ -0.21
PCNAP12004 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.77□□□□□ -0.21
PCNAP12004 POM121L10P-201ENST00000436994 1285 ntBASIC13.77□□□□□ -0.21
PCNAP12004 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.77□□□□□ -0.21
PCNAP12004 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC13.77□□□□□ -0.21
PCNAP12004 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC13.77□□□□□ -0.21
PCNAP12004 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.77□□□□□ -0.21
PCNAP12004 AL591846.1-201ENST00000451736 433 ntBASIC13.77□□□□□ -0.21
PCNAP12004 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
PCNAP12004 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
PCNAP12004 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.77□□□□□ -0.21
PCNAP12004 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
PCNAP12004 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
PCNAP12004 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
PCNAP12004 AC106794.1-201ENST00000506935 792 ntBASIC13.77□□□□□ -0.21
PCNAP12004 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
PCNAP12004 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC13.77□□□□□ -0.21
PCNAP12004 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.77□□□□□ -0.21
PCNAP12004 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms