Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 RN7SL555P-201ENST00000584742 339 ntBASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 AL109837.1-201ENST00000603272 613 ntBASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 AC023794.5-201ENST00000564380 2157 ntBASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 AC067931.2-201ENST00000623655 2003 ntBASIC13.68□□□□□ -0.22
CUEDC1Q9NWM3 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 AL590824.1-201ENST00000403828 1349 ntBASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 KRT17P5-201ENST00000332088 839 ntBASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 AC006335.1-201ENST00000445200 547 ntBASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 LY6E-208ENST00000520531 490 ntTSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 KRT8P1-201ENST00000557533 1207 ntBASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 RN7SL574P-201ENST00000581512 297 ntBASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 IRF3-215ENST00000596822 823 ntTSL 3 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 AC011491.1-203ENST00000637688 543 ntBASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 LINC02139-201ENST00000612023 2005 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 AL359881.3-201ENST00000602640 1721 ntBASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CUEDC1Q9NWM3 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CUEDC1Q9NWM3 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CUEDC1Q9NWM3 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC13.66□□□□□ -0.22
CUEDC1Q9NWM3 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.66□□□□□ -0.22
CUEDC1Q9NWM3 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CUEDC1Q9NWM3 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CUEDC1Q9NWM3 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CUEDC1Q9NWM3 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CUEDC1Q9NWM3 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CUEDC1Q9NWM3 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CUEDC1Q9NWM3 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CUEDC1Q9NWM3 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms